Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3589 109 5e-19 seq2758 96.9 3e-15 seq2177 89.7 5e-13 >seq3589 Length=6346 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | || || || ||||| |||||||| ||||| | || | |||| Sbjct 3226 AAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTC 3285 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| |||| || |||||||| ||||| || || || || || || Sbjct 3286 CTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTC 3345 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || || | || || | || ||||| | || | ||| Sbjct 3346 TTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGT 3405 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||||||| || ||||| || ||||| Sbjct 3406 CTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | ||| || || |||| |||||| || || || |||||||| || || Sbjct 3718 ACCGCCACGCAGGCGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 3777 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || |||||||||||||| || | ||||| ||||||| ||| || || Sbjct 3778 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGG 3836 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 3837 GATGCCCTCCTTGTCCTGGATCTT 3860 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| | || | || || || || || |||||||| || || Sbjct 2983 ACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 3042 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || |||||||||||||| || |||| || ||||||||||| || || Sbjct 3043 CAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGG 3102 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | ||||| | ||||| Sbjct 3103 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCAC 3162 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 3163 CTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 >seq2758 Length=2532 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | ||||| || || | |||||| || || || |||||||| || | Sbjct 1690 ACCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 1631 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| || |||||||||||||| | || || |||||||||||||| || Sbjct 1630 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1571 Query 64336 AATTCCTTCTTTTTCT 64351 || || || || ||| Sbjct 1570 GATGCCCTCCTTGTCT 1555 >seq2177 Length=34801 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || |||||| |||| || |||||||||||||| | || Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || ||||| || || || || || || || ||| ||| || Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || || || || || || | || | ||||||||| |||| || || ||||| Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608900521120