Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5249 197 1e-45 seq1666 134 1e-26 seq3589 86.0 6e-12 >seq5249 Length=10599 Score = 197 bits (218), Expect = 1e-45 Identities = 571/866 (66%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 153603 GACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAG 153662 || |||| || ||||| || ||| |||| | | |||||| || ||||| ||| Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022 Query 153663 AGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCT 153722 |||||| || ||| |||| || | || ||||| ||||| ||||| ||||| Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962 Query 153723 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAG 153781 ||| |||||||| | || |||||||||| || | || | || | || ||| Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGG-CGTACCACAG 7903 Query 153782 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCG 153841 | ||| || || | || ||| ||||| || |||||||| | ||| ||||| Sbjct 7902 CTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843 Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 ||||||||||||||||||| |||||||| || || || || || ||||| || | Sbjct 7842 CTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGT 7783 Query 153902 CCACATATCGTCG----GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGT 153957 ||| |||| || || | ||| || |||||||||||| || ||||| || |||| Sbjct 7782 CCA---ATCGCCGTTTTGC-TCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGT 7727 Query 153958 ACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCAC 154015 | | | |||||| || | || ||| || ||| || | || | ||| | Sbjct 7726 AGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTT--CTTGCGGAGGTCGAGGAA 7669 Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TT 154072 | ||| |||||||||||| || || | ||||| ||| | ||||| ||| || Sbjct 7668 GGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTT 7609 Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132 || ||||| || |||| ||| | | |||||| |||| || | |||||| |||||| Sbjct 7608 GCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCC 7549 Query 154133 GCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192 | | | |||||||||||| | || | | ||| | || | | || ||||| Sbjct 7548 GTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTT 7489 Query 154193 AACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAG 154250 | || || || || ||||| ||| || || || | |||| || || |||| Sbjct 7488 GAGACCGATTCCACCGGCCGT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTGTCGTAG 7431 Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310 ||||| |||||||| || || | | ||| |||||| || || | || || || Sbjct 7430 ATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTG 7371 Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370 | || || || || | ||||||| ||||| ||||| ||||| ||||| | Sbjct 7370 GGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAG 7311 Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430 ||||||||| ||||| | ||| || | |||||||| || || | ||||| ||||| Sbjct 7310 TTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATA 7251 Query 154431 AGCATGTGCTGCGGACGTTCGGCGAC 154456 | ||||||||| || | |||||| || Sbjct 7250 ATCATGTGCTGTGGTCTTTCGGCAAC 7225 >seq1666 Length=59928 Score = 134 bits (148), Expect = 1e-26 Identities = 290/430 (67%), Gaps = 23/430 (5%) Strand=Plus/Minus Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478 |||||||| | || || |||| ||| || ||||||| | | || | | || Sbjct 55621 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGT 55562 Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538 | ||||| || ||||| ||| ||||||| | || || |||||||| || ||||||| Sbjct 55561 CTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACC 55502 Query 52539 GACTTTGCGTGCCT--------CT-ACTACAAGACGCGCGTGACCGAAAAATTGGATTCG 52589 |||||||| ||||| || || |||| || |||| | || | Sbjct 55501 GACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTCGAAGCCGACCCCCGA---GGCTGTT 55445 Query 52590 GACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCC 52649 || | |||| | ||| ||||| || | || || | ||||| | || | | Sbjct 55444 GAGAAGATCAT-----TGTC----GAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGAC 55394 Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || || | ||||| ||||||||||| ||||||| ||||||| |||||| Sbjct 55393 GCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTT 55334 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCC 52768 || || || || ||| ||||| ||| || || | | ||| ||| |||| || ||| || Sbjct 55333 GTTGCTGACCGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAACTCTACCAACCC 55275 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || || ||| | ||||||||||| | |||||||||||||| ||||||||||| || Sbjct 55274 CTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGT 55215 Query 52829 CGGCGAGTAT 52838 || || ||| Sbjct 55214 TGGTGACTAT 55205 >seq3589 Length=6346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | ||||||||||||| ||||||||||| | Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||||||||| || || || | | | || || ||||| || || || || Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||||| | |||||| || Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || |||| ||| || || || |||||||| Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226743546560