Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 197 1e-45
seq1666 134 1e-26
seq3589 86.0 6e-12
>seq5249
Length=10599
Score = 197 bits (218), Expect = 1e-45
Identities = 571/866 (66%), Gaps = 21/866 (2%)
Strand=Plus/Minus
Query 153603 GACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAG 153662
|| |||| || ||||| || ||| |||| | | |||||| || ||||| |||
Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022
Query 153663 AGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCT 153722
|||||| || ||| |||| || | || ||||| ||||| ||||| |||||
Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962
Query 153723 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAG 153781
||| |||||||| | || |||||||||| || | || | || | || |||
Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGG-CGTACCACAG 7903
Query 153782 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCG 153841
| ||| || || | || ||| ||||| || |||||||| | ||| |||||
Sbjct 7902 CTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843
Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901
||||||||||||||||||| |||||||| || || || || || ||||| || |
Sbjct 7842 CTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGT 7783
Query 153902 CCACATATCGTCG----GCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGT 153957
||| |||| || || | ||| || |||||||||||| || ||||| || ||||
Sbjct 7782 CCA---ATCGCCGTTTTGC-TCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGT 7727
Query 153958 ACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCAC 154015
| | | |||||| || | || ||| || ||| || | || | ||| |
Sbjct 7726 AGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTT--CTTGCGGAGGTCGAGGAA 7669
Query 154016 GCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TT 154072
| ||| |||||||||||| || || | ||||| ||| | ||||| ||| ||
Sbjct 7668 GGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTT 7609
Query 154073 TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCC 154132
|| ||||| || |||| ||| | | |||||| |||| || | |||||| ||||||
Sbjct 7608 GCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCC 7549
Query 154133 GCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTT 154192
| | | |||||||||||| | || | | ||| | || | | || |||||
Sbjct 7548 GTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTT 7489
Query 154193 AACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAG 154250
| || || || || ||||| ||| || || || | |||| || || ||||
Sbjct 7488 GAGACCGATTCCACCGGCCGT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTGTCGTAG 7431
Query 154251 ATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATG 154310
||||| |||||||| || || | | ||| |||||| || || | || || ||
Sbjct 7430 ATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTG 7371
Query 154311 CGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATG 154370
| || || || || | ||||||| ||||| ||||| ||||| ||||| |
Sbjct 7370 GGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAG 7311
Query 154371 CGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATG 154430
||||||||| ||||| | ||| || | |||||||| || || | ||||| |||||
Sbjct 7310 TTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATA 7251
Query 154431 AGCATGTGCTGCGGACGTTCGGCGAC 154456
| ||||||||| || | |||||| ||
Sbjct 7250 ATCATGTGCTGTGGTCTTTCGGCAAC 7225
>seq1666
Length=59928
Score = 134 bits (148), Expect = 1e-26
Identities = 290/430 (67%), Gaps = 23/430 (5%)
Strand=Plus/Minus
Query 52419 GTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGC 52478
|||||||| | || || |||| ||| || ||||||| | | || | | ||
Sbjct 55621 GTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATCTTCTGGCTCAAGAAGCGTGGT 55562
Query 52479 ATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACG 52538
| ||||| || ||||| ||| ||||||| | || || |||||||| || |||||||
Sbjct 55561 CTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACC 55502
Query 52539 GACTTTGCGTGCCT--------CT-ACTACAAGACGCGCGTGACCGAAAAATTGGATTCG 52589
|||||||| ||||| || || |||| || |||| | || |
Sbjct 55501 GACTTTGCCTGCCTGCTCTTCTCTCACATCAAGTCGAAGCCGACCCCCGA---GGCTGTT 55445
Query 52590 GACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCC 52649
|| | |||| | ||| ||||| || | || || | ||||| | || | |
Sbjct 55444 GAGAAGATCAT-----TGTC----GAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGAC 55394
Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709
|| || || || | ||||| ||||||||||| ||||||| ||||||| ||||||
Sbjct 55393 GCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTACATTGAGTTT 55334
Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCC 52768
|| || || || ||| ||||| ||| || || | | ||| ||| |||| || ||| ||
Sbjct 55333 GTTGCTGACCGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAACTCTACCAACCC 55275
Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828
|| || || ||| | ||||||||||| | |||||||||||||| ||||||||||| ||
Sbjct 55274 CTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGT 55215
Query 52829 CGGCGAGTAT 52838
|| || |||
Sbjct 55214 TGGTGACTAT 55205
>seq3589
Length=6346
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | ||||||||||||| ||||||||||| |
Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || | ||||||||| || || || | | | || || ||||| || || || ||
Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || ||||| ||| || || | | || | ||||| | |||||| ||
Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACT 3391
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | ||| | || || || |||| ||| || || || ||||||||
Sbjct 3392 TCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496226743546560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |