Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 123 2e-23
seq3589 122 8e-23
seq2758 95.1 1e-14
seq2177 89.7 5e-13
>seq1666
Length=59928
Score = 123 bits (136), Expect = 2e-23
Identities = 299/449 (67%), Gaps = 13/449 (3%)
Strand=Plus/Minus
Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198
||| | ||||| || || ||||||||| |||||||| ||| ||| ||| | ||
Sbjct 55642 CGTCTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATC 55583
Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258
|| | | || | || | ||||| || || || || ||||||||| |||||
Sbjct 55582 TTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCT 55523
Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACACTAGAGTCGAT 47315
| ||||| ||| |||||||| |||||||||| || || || ||| | ||||||
Sbjct 55522 CGCGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCA-AGTCGA- 55465
Query 47316 CAAAAGTTGGACGTGCCCA--CCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGA 47373
|| | | || | | || | || ||| ||| ||||||| ||||||
Sbjct 55464 ----AGCCGACCC--CCGAGGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGC 55411
Query 47374 TGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGA 47433
||||| | | || ||||| |||| || | | || |||||||| | | |||
Sbjct 55410 AAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGT 55351
Query 47434 GAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTT 47493
| ||||||| || ||||| || ||||||||||| || ||| | ||| |
Sbjct 55350 GCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACT 55291
Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553
|| || | || || ||||| || ||| | |||||||||||| | |||||||||||||
Sbjct 55290 ACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACT 55231
Query 47554 TTTTCGAGAAGCGCGTCGGCGAATATAAA 47582
| |||||||||||||| || || ||| ||
Sbjct 55230 TCTTCGAGAAGCGCGTTGGTGACTATCAA 55202
>seq3589
Length=6346
Score = 122 bits (134), Expect = 8e-23
Identities = 172/238 (72%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936
|| ||||| |||||||| | || | |||||| || | || ||||| || || || ||
Sbjct 2975 CTCTACTGA-CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTT 3033
Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996
||| ||| ||| ||| || ||| || ||||| || || ||| | |||| ||||||||
Sbjct 3034 GTAGTCGGCCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 3093
Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055
|| || || ||||||||||||||| || || ||||| |||| |||| || ||||
Sbjct 3094 GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATCGTATCCG 3152
Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||| || || | || | ||| |||||||||| || || || || ||||||||
Sbjct 3153 AAGACTCCACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| ||||| || ||||| || ||
Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| | || || ||||| || || || | |||| |||||||||||||| ||
Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||||||||| ||| ||| ||||| |||| || | ||||| | ||||||
Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATCGTGTCTGACGACTCGAC 3390
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || |||||||||| ||| || || || ||||||||
Sbjct 3391 TTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | |||||| || | || || || || ||||| ||||| ||| |
Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || || || || || ||| ||||||| |||||||| || || ||
Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| || || ||||| | |||| |||||| | ||||||
Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619
Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089
|||| ||| | || ||||| ||
Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGT 3642
Score = 93.3 bits (102), Expect = 4e-14
Identities = 128/175 (73%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| ||| | | ||||| ||| || ||||| || ||
Sbjct 3748 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCC 3807
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|||| |||| | |||||||| || || || ||||||||||||||| ||| || |||
Sbjct 3808 AGCGAAGATGAGACGCTGCTG-TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 3866
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
|| |||| |||| |||||| | |||||| || | ||| | || ||||| ||
Sbjct 3867 GACGTTG-TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920
>seq2758
Length=2532
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||||| || | ||| ||||| || || || ||||| ||| |
Sbjct 1689 CCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1630
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| |||||| |||||||| ||||| ||
Sbjct 1629 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1570
Query 127007 ATGCCCTCCTTGTCCGT 127023
|||||||||||||| ||
Sbjct 1569 ATGCCCTCCTTGTCTGT 1553
>seq2177
Length=34801
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || || ||| |||||
Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| ||| || ||||| | |||
Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| |||||||| ||| || |||| ||| | || ||||| ||||| || || || ||
Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475466635267520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |