Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1666 123 2e-23 seq3589 122 8e-23 seq2758 95.1 1e-14 seq2177 89.7 5e-13 >seq1666 Length=59928 Score = 123 bits (136), Expect = 2e-23 Identities = 299/449 (67%), Gaps = 13/449 (3%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||| | ||||| || || ||||||||| |||||||| ||| ||| ||| | || Sbjct 55642 CGTCTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTCGCGTCCATC 55583 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | ||||| || || || || ||||||||| ||||| Sbjct 55582 TTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCT 55523 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCT---CTACTACAACACTAGAGTCGAT 47315 | ||||| ||| |||||||| |||||||||| || || || ||| | |||||| Sbjct 55522 CGCGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTCTCACATCA-AGTCGA- 55465 Query 47316 CAAAAGTTGGACGTGCCCA--CCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGA 47373 || | | || | | || | || ||| ||| ||||||| |||||| Sbjct 55464 ----AGCCGACCC--CCGAGGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGC 55411 Query 47374 TGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGA 47433 ||||| | | || ||||| |||| || | | || |||||||| | | ||| Sbjct 55410 AAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTCATGT 55351 Query 47434 GAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTT 47493 | ||||||| || ||||| || ||||||||||| || ||| | ||| | Sbjct 55350 GCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACT 55291 Query 47494 ACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACT 47553 || || | || || ||||| || ||| | |||||||||||| | ||||||||||||| Sbjct 55290 ACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACT 55231 Query 47554 TTTTCGAGAAGCGCGTCGGCGAATATAAA 47582 | |||||||||||||| || || ||| || Sbjct 55230 TCTTCGAGAAGCGCGTTGGTGACTATCAA 55202 >seq3589 Length=6346 Score = 122 bits (134), Expect = 8e-23 Identities = 172/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| |||||||| | || | |||||| || | || ||||| || || || || Sbjct 2975 CTCTACTGA-CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTT 3033 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| ||| ||| ||| || ||| || ||||| || || ||| | |||| |||||||| Sbjct 3034 GTAGTCGGCCAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTG 3093 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 || || || ||||||||||||||| || || ||||| |||| |||| || |||| Sbjct 3094 GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCGATCGTATCCG 3152 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| || || | || | ||| |||||||||| || || || || |||||||| Sbjct 3153 AAGACTCCACCTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| ||||| || ||||| || || Sbjct 3212 CCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCC 3271 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| | || || ||||| || || || | |||| |||||||||||||| || Sbjct 3272 AACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGG 3331 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||||| |||| || | ||||| | |||||| Sbjct 3332 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATCGTGTCTGACGACTCGAC 3390 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || |||||||||| ||| || || || |||||||| Sbjct 3391 TTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||| || | || || || || ||||| ||||| ||| | Sbjct 3440 CCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCA 3499 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || || ||| ||||||| |||||||| || || || Sbjct 3500 AGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGG 3559 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| || || ||||| | |||| |||||| | |||||| Sbjct 3560 ATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACT 3619 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| ||| | || ||||| || Sbjct 3620 TCGAGGGTGATGGTCTTGCCAGT 3642 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | | ||||| ||| || ||||| || || Sbjct 3748 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCC 3807 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||| | |||||||| || || || ||||||||||||||| ||| || ||| Sbjct 3808 AGCGAAGATGAGACGCTGCTG-TCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 3866 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 || |||| |||| |||||| | |||||| || | ||| | || ||||| || Sbjct 3867 GACGTTG-TCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920 >seq2758 Length=2532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| ||| | Sbjct 1689 CCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1630 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 1629 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 1570 Query 127007 ATGCCCTCCTTGTCCGT 127023 |||||||||||||| || Sbjct 1569 ATGCCCTCCTTGTCTGT 1553 >seq2177 Length=34801 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||||| ||| || |||| ||| | || ||||| ||||| || || || || Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475466635267520