Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5249 107 2e-18 seq3589 93.3 4e-14 >seq5249 Length=10599 Score = 107 bits (118), Expect = 2e-18 Identities = 468/728 (64%), Gaps = 17/728 (2%) Strand=Plus/Plus Query 122828 CCTCGATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaa 122887 || ||| | | | ||| |||| ||||| | ||| ||| | || | ||| ||| Sbjct 7152 CCGCGACTTCAACTACCAATACTTTGGCTTCAAGACGCTCGAGAGGTCATACTTGCTCCG 7211 Query 122888 aaTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGT 122947 ||||| | ||||| |||||| | || || ||| | ||||| |||||| | || | Sbjct 7212 CATCGATGGCAAGGTTGCCGAAAGACCACAGCACATGATTATGCGTGTCGCTGTTGGAAT 7271 Query 122948 GCACGGACGCGA-CATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTT 123006 ||||| || || ||| ||||| || | ||||| ||| | |||||||||||||| | | Sbjct 7272 CCACGG-CGAGAACATTGAAAAGGCCATTGAAACGTACAACTTGATGTCTCAAAAGTACT 7330 Query 123007 TCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGT 123066 | || ||||| |||||| |||||| ||| || || ||| ||| | | || | Sbjct 7331 TTACCCACGCTTCTCCCACCTTGTTCAACGCTGGTACCCCCAAGCCCCAGCTTGCATCAT 7390 Query 123067 GTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-T 123125 | || ||| || | || || ||||||||| || ||||| || || | | || | Sbjct 7391 GCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACCCT-CAAGACT 7449 Query 123126 TGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGC 123185 || || |||||||||| | ||| || || || | ||||| ||| | | | Sbjct 7450 TGTGCCATGATTTCCAAGACGGCCGGTGGAATCGGTCTCAACGTCCACCGCATCCGTTCA 7509 Query 123186 CGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAAT-CCATGCTGCG 123244 || | ||| | ||| |||| | | || ||| || || | ||||||| || Sbjct 7510 ACTGGCTCCTACATTGCTGGTACCAACGGCACCTCCAACGGCCT-GATTCCCATGCTCCG 7568 Query 123245 AGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGAT 123301 || ||||| ||| ||| || |||| |||||||| || ||| ||| || || | Sbjct 7569 TGTCTACAACAACACCGCTCGCTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCTTT 7628 Query 123302 GGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC-- 123359 || ||||| || || || ||||||| || || | | || | | | ||| Sbjct 7629 TGCCATCTACCTGGAGCCTTGGCACGCCGACGTCTTCCCCTTCCTCGACCT---CCGCAA 7685 Query 123360 -AACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418 ||| || |||||| || ||||| ||||| ||||| | ||||| || || Sbjct 7686 GAACCACGGAAAGGAAGAGGTCCGCGCACGCGACTTGTTCTACGCCCTGTGGGTTCCTGA 7745 Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG 123478 | |||| ||| || || | | |||||| ||| | |||||||| ||| || | Sbjct 7746 TCTGTTCATGAAGCGTGTCGAGCAAAACGGCGATTGGACTCTCATGTG-CCCTCACGAGG 7804 Query 123479 TCCCGGCT-TGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC 123537 ||||| | | ||| || |||||| | ||||||| ||| |||| | | |||||| Sbjct 7805 CCCCGGGTCTCGCCGATGTCTACGGCGACGAGTTTGAGGAGCTGTATGAGAGGTACGAGA 7864 Query 123538 GCGAAGGC 123545 | |||||| Sbjct 7865 GGGAAGGC 7872 >seq3589 Length=6346 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || || || ||||| | | ||| | ||||| ||||| ||||||||||| || || || Sbjct 3209 ATACCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCT 3268 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 || ||| || | || || | || || ||||| | |||| || ||||| || || Sbjct 3269 GCCAACG-TTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGG 3327 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||| || || || || ||||| || || |||| || | || | ||||| || |||| Sbjct 3328 CGGGATACCCTCCTTGTCTTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCTGACGACT 3386 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || |||| || |||||||| | ||| || || || || ||||| Sbjct 3387 CGACTTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| | || || || |||||||| || || || || ||| Sbjct 3437 ATACCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCG 3496 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | ||| || || ||| | ||||| || |||||||| ||| Sbjct 3497 GCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGC 3556 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || ||||| ||||| || |||| || | ||||||||| || ||| Sbjct 3557 GGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCG 3616 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||||| || | || ||||| || Sbjct 3617 ACTTCGAGGGTGATGGTCTTGCCAGT 3642 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| | ||||| || || ||||| ||||| || || ||| Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | |||| || ||||||||||| ||| Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || ||||| || |||| || | || | || || |||||||| || Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATCGTATCCGAAGACTCCAC 3162 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| |||||||| | || || || || || ||||| Sbjct 3163 CTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970723570080