Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 107 2e-18
seq3589 93.3 4e-14
>seq5249
Length=10599
Score = 107 bits (118), Expect = 2e-18
Identities = 468/728 (64%), Gaps = 17/728 (2%)
Strand=Plus/Plus
Query 122828 CCTCGATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaa 122887
|| ||| | | | ||| |||| ||||| | ||| ||| | || | ||| |||
Sbjct 7152 CCGCGACTTCAACTACCAATACTTTGGCTTCAAGACGCTCGAGAGGTCATACTTGCTCCG 7211
Query 122888 aaTCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGT 122947
||||| | ||||| |||||| | || || ||| | ||||| |||||| | || |
Sbjct 7212 CATCGATGGCAAGGTTGCCGAAAGACCACAGCACATGATTATGCGTGTCGCTGTTGGAAT 7271
Query 122948 GCACGGACGCGA-CATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTT 123006
||||| || || ||| ||||| || | ||||| ||| | |||||||||||||| | |
Sbjct 7272 CCACGG-CGAGAACATTGAAAAGGCCATTGAAACGTACAACTTGATGTCTCAAAAGTACT 7330
Query 123007 TCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGT 123066
| || ||||| |||||| |||||| ||| || || ||| ||| | | || |
Sbjct 7331 TTACCCACGCTTCTCCCACCTTGTTCAACGCTGGTACCCCCAAGCCCCAGCTTGCATCAT 7390
Query 123067 GTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-T 123125
| || ||| || | || || ||||||||| || ||||| || || | | || |
Sbjct 7391 GCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACCCT-CAAGACT 7449
Query 123126 TGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGC 123185
|| || |||||||||| | ||| || || || | ||||| ||| | | |
Sbjct 7450 TGTGCCATGATTTCCAAGACGGCCGGTGGAATCGGTCTCAACGTCCACCGCATCCGTTCA 7509
Query 123186 CGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAAT-CCATGCTGCG 123244
|| | ||| | ||| |||| | | || ||| || || | ||||||| ||
Sbjct 7510 ACTGGCTCCTACATTGCTGGTACCAACGGCACCTCCAACGGCCT-GATTCCCATGCTCCG 7568
Query 123245 AGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGAT 123301
|| ||||| ||| ||| || |||| |||||||| || ||| ||| || || |
Sbjct 7569 TGTCTACAACAACACCGCTCGCTACGTTGACCAGGGTGGCAACAAGCGCCCTGGTGCTTT 7628
Query 123302 GGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC-- 123359
|| ||||| || || || ||||||| || || | | || | | | |||
Sbjct 7629 TGCCATCTACCTGGAGCCTTGGCACGCCGACGTCTTCCCCTTCCTCGACCT---CCGCAA 7685
Query 123360 -AACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418
||| || |||||| || ||||| ||||| ||||| | ||||| || ||
Sbjct 7686 GAACCACGGAAAGGAAGAGGTCCGCGCACGCGACTTGTTCTACGCCCTGTGGGTTCCTGA 7745
Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG 123478
| |||| ||| || || | | |||||| ||| | |||||||| ||| || |
Sbjct 7746 TCTGTTCATGAAGCGTGTCGAGCAAAACGGCGATTGGACTCTCATGTG-CCCTCACGAGG 7804
Query 123479 TCCCGGCT-TGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC 123537
||||| | | ||| || |||||| | ||||||| ||| |||| | | ||||||
Sbjct 7805 CCCCGGGTCTCGCCGATGTCTACGGCGACGAGTTTGAGGAGCTGTATGAGAGGTACGAGA 7864
Query 123538 GCGAAGGC 123545
| ||||||
Sbjct 7865 GGGAAGGC 7872
>seq3589
Length=6346
Score = 93.3 bits (102), Expect = 4e-14
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| || || ||||| | | ||| | ||||| ||||| ||||||||||| || || ||
Sbjct 3209 ATACCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCT 3268
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
|| ||| || | || || | || || ||||| | |||| || ||||| || ||
Sbjct 3269 GCCAACG-TTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGG 3327
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288
||| || || || || ||||| || || |||| || | || | ||||| || ||||
Sbjct 3328 CGGGATACCCTCCTTGTCTTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCTGACGACT 3386
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||| || |||| || |||||||| | ||| || || || || |||||
Sbjct 3387 CGACTTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | || || || |||||||| || || || || |||
Sbjct 3437 ATACCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCG 3496
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | || || | ||| || || ||| | ||||| || |||||||| |||
Sbjct 3497 GCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGC 3556
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || ||||| ||||| || |||| || | ||||||||| || |||
Sbjct 3557 GGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCG 3616
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||||||| || | || ||||| ||
Sbjct 3617 ACTTCGAGGGTGATGGTCTTGCCAGT 3642
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | ||| | ||||| || || ||||| ||||| || || |||
Sbjct 2984 CCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3043
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | || || || ||| | |||| || ||||||||||| |||
Sbjct 3044 AACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 3103
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || ||||| || |||| || | || | || || |||||||| ||
Sbjct 3104 ATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATCGTATCCGAAGACTCCAC 3162
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || |||| ||| |||||||| | || || || || || |||||
Sbjct 3163 CTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451970723570080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |