Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 179 6e-40
seq5249 96.9 6e-15
>seq1666
Length=59928
Score = 179 bits (198), Expect = 6e-40
Identities = 337/495 (68%), Gaps = 3/495 (1%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| |||||||||||||| | | || || |||||||| |||| |||||
Sbjct 55220 CTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTT 55279
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| || ||| ||||| || || ||| |||||| | ||| || ||||| ||
Sbjct 55280 GGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGGTCAGCAACAAACTC 55339
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
||||| ||||| | || ||| || || ||||| ||||||||| || || |
Sbjct 55340 AATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACGGGGAGAGCGTCAGT 55399
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888
||| ||||| | |||||||||||| || ||| | |||| | ||| |||
Sbjct 55400 CAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATCTTCTCAACAGCCTCGGGGGT 55459
Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948
|||||| | | || || || || ||||| ||||||||| ||||| |||||
Sbjct 55460 CGGCTT---CGACTTGATGTGAGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTC 55516
Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008
||| |||||||||| ||||||||| | | || || ||||| | |||||| |||||
Sbjct 55517 GTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAG 55576
Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068
||| || |||| ||| || | ||||| || ||||| ||||| ||||| ||||| || |
Sbjct 55577 CCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGAT 55636
Query 160069 GAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT 160128
||| | | |||| | | ||| |||| | |||| | ||||| || |||||
Sbjct 55637 GAGACGCGATGCAAAGGTCGAGTTCTTGTCGCAGATCCAGCGCAGAGCCCAGTCGGCCTT 55696
Query 160129 CTTTGCGATGCACGG 160143
||| |||||| ||
Sbjct 55697 CTTCTTGATGCAGGG 55711
>seq5249
Length=10599
Score = 96.9 bits (106), Expect = 6e-15
Identities = 452/704 (64%), Gaps = 14/704 (2%)
Strand=Plus/Minus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACAT 203895
||||| || || ||||||||||||| | |||| |||| | | ||| ||||||||
Sbjct 9004 TCTTGGTCGACGGTGAACTGAATGGGGGCAGATGCAG-CCTGAGTGCGCAGGTAGTACAT 8946
Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955
||| ||||| || || || ||| || | ||||||||||| | |||| || |
Sbjct 8945 GCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGCATGGAAGTGATCTTGCCCATCGT 8886
Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014
|| || |||||| ||||| || || || |||||||| |||||| || || || |
Sbjct 8885 AGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGGTCGAT-AAAGGCACCACGGTCGG 8827
Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074
| ||||| | || ||| | ||| |||||||||||||| |||||| | | | | ||
Sbjct 8826 CAGCCATCTGGACGATGTTGCGCTGAGAAATCTCCCACACAGTCTTGTAGAGGGCCTTGA 8767
Query 204075 TGT-GTTGAGGCACATCTTCCCACGTCCT--GATCGAGCCGTTGTCGGCCATCAGTCTCA 204131
||| || | || || || | | | || ||||| ||| || || | |
Sbjct 8766 TGTCGTCGGGG---ATGTTGGGAATTTGTTGAATAGAGCCATTGGACGCGATGATGCGGT 8710
Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191
|| || | | ||| ||||| |||| || || ||| | || |||||||
Sbjct 8709 TCTTCATGTTGTCCGACCACAGACCCATGTCGACAAGGTCCTTAAGCAACCATGGGTTGA 8650
Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251
| || || || || | ||||| | || | | | | |||| |||| | || || |
Sbjct 8649 CAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTTGGAGGTGTAGGGCTCAA 8590
Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311
| ||||||| ||| | || || || ||| || ||||||||||| | ||||
Sbjct 8589 AACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGGCATGGGAGCAACAAGCA 8530
Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371
| ||||||||| |||| | | | || ||| |||| |||||| |
Sbjct 8529 AGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAGAGCCTCCCAGTCCCAGAGGT 8470
Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431
| |||| || | |||||||||| | || |||||||| ||| | | || || |
Sbjct 8469 CTGTGGGCGTCTTGTTCCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAACCTT 8410
Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491
||||| || |||| ||||| | ||||||| |||||| | || ||| |
Sbjct 8409 CGTACGACGAGTAAGCTCCATCCTTCTTAGCCAGCTCAATCGAGGCAGTCAGGGCACCGT 8350
Query 204492 AGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC 204534
||| |||||||| || ||||||| | |||| ||| | ||||||
Sbjct 8349 -GTAGATGGTCTCGAAAATCTGAATG-TTAAGCTGCCTGGCCTC 8308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795098068098880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |