Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1666 179 6e-40 seq5249 96.9 6e-15 >seq1666 Length=59928 Score = 179 bits (198), Expect = 6e-40 Identities = 337/495 (68%), Gaps = 3/495 (1%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | | || || |||||||| |||| ||||| Sbjct 55220 CTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATGAAGTCGAAGGGGTT 55279 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || ||| ||||| || || ||| |||||| | ||| || ||||| || Sbjct 55280 GGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGGTCAGCAACAAACTC 55339 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| | || ||| || || ||||| ||||||||| || || | Sbjct 55340 AATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACGGGGAGAGCGTCAGT 55399 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 ||| ||||| | |||||||||||| || ||| | |||| | ||| ||| Sbjct 55400 CAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATCTTCTCAACAGCCTCGGGGGT 55459 Query 159889 CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTC 159948 |||||| | | || || || || ||||| ||||||||| ||||| ||||| Sbjct 55460 CGGCTT---CGACTTGATGTGAGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTC 55516 Query 159949 GTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAG 160008 ||| |||||||||| ||||||||| | | || || ||||| | |||||| ||||| Sbjct 55517 GTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAG 55576 Query 160009 CCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCAC 160068 ||| || |||| ||| || | ||||| || ||||| ||||| ||||| ||||| || | Sbjct 55577 CCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGAT 55636 Query 160069 GAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTT 160128 ||| | | |||| | | ||| |||| | |||| | ||||| || ||||| Sbjct 55637 GAGACGCGATGCAAAGGTCGAGTTCTTGTCGCAGATCCAGCGCAGAGCCCAGTCGGCCTT 55696 Query 160129 CTTTGCGATGCACGG 160143 ||| |||||| || Sbjct 55697 CTTCTTGATGCAGGG 55711 >seq5249 Length=10599 Score = 96.9 bits (106), Expect = 6e-15 Identities = 452/704 (64%), Gaps = 14/704 (2%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACAT 203895 ||||| || || ||||||||||||| | |||| |||| | | ||| |||||||| Sbjct 9004 TCTTGGTCGACGGTGAACTGAATGGGGGCAGATGCAG-CCTGAGTGCGCAGGTAGTACAT 8946 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| ||||| || || || ||| || | ||||||||||| | |||| || | Sbjct 8945 GCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGCATGGAAGTGATCTTGCCCATCGT 8886 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 || || |||||| ||||| || || || |||||||| |||||| || || || | Sbjct 8885 AGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGGTCGAT-AAAGGCACCACGGTCGG 8827 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| | || ||| | ||| |||||||||||||| |||||| | | | | || Sbjct 8826 CAGCCATCTGGACGATGTTGCGCTGAGAAATCTCCCACACAGTCTTGTAGAGGGCCTTGA 8767 Query 204075 TGT-GTTGAGGCACATCTTCCCACGTCCT--GATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 ||| || | || || || | | | || ||||| ||| || || | | Sbjct 8766 TGTCGTCGGGG---ATGTTGGGAATTTGTTGAATAGAGCCATTGGACGCGATGATGCGGT 8710 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | | ||| ||||| |||| || || ||| | || ||||||| Sbjct 8709 TCTTCATGTTGTCCGACCACAGACCCATGTCGACAAGGTCCTTAAGCAACCATGGGTTGA 8650 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | || || || || | ||||| | || | | | | |||| |||| | || || | Sbjct 8649 CAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTTGGAGGTGTAGGGCTCAA 8590 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||| ||| | || || || ||| || ||||||||||| | |||| Sbjct 8589 AACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGGCATGGGAGCAACAAGCA 8530 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | ||||||||| |||| | | | || ||| |||| |||||| | Sbjct 8529 AGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAGAGCCTCCCAGTCCCAGAGGT 8470 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | |||| || | |||||||||| | || |||||||| ||| | | || || | Sbjct 8469 CTGTGGGCGTCTTGTTCCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAACCTT 8410 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491 ||||| || |||| ||||| | ||||||| |||||| | || ||| | Sbjct 8409 CGTACGACGAGTAAGCTCCATCCTTCTTAGCCAGCTCAATCGAGGCAGTCAGGGCACCGT 8350 Query 204492 AGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC 204534 ||| |||||||| || ||||||| | |||| ||| | |||||| Sbjct 8349 -GTAGATGGTCTCGAAAATCTGAATG-TTAAGCTGCCTGGCCTC 8308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795098068098880