Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2177 134 2e-26
seq3589 127 2e-24
seq2758 122 1e-22
>seq2177
Length=34801
Score = 134 bits (148), Expect = 2e-26
Identities = 139/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| |
Sbjct 6204 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6145
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 6144 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6085
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 6084 CGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 6025
Query 46584 AG 46585
||
Sbjct 6024 AG 6023
>seq3589
Length=6346
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || |||||||||||| |||||||| | | || | |
Sbjct 3223 ACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCC 3282
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| |||||||||||||| || || |||| ||||||||| |||| ||| | | ||||||
Sbjct 3283 GTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTT 3342
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
||| ||||||| ||||| ||| | | | |||||| ||| || || || | ||| |
Sbjct 3343 GTCTTGGATCTTCGACTTGA-CGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAA 3401
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| |||| || || || ||||| |||||
Sbjct 3402 TGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 122 bits (134), Expect = 1e-22
Identities = 127/167 (76%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| || || |||||||||| || ||||| |||| ||||| ||||||||||||||
Sbjct 3476 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAG 3535
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||||||||||||||| | ||| | || |||||| ||| ||||| ||||| |
Sbjct 3536 ATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTG 3595
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | |||||| |||||| || || | |||||||| ||||| ||
Sbjct 3596 TCGATGGTGTCGGACGATTCGACTTCGAGGGTGATGGTCTTGCCAGT 3642
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| |||| || |||||| ||||| |||||||||| | || || |
Sbjct 2995 ACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCC 3054
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| |||| |||||||||||| | || | || ||||||
Sbjct 3055 ATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 3114
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| ||||| ||| | | | ||| || || ||||| || | ||| |
Sbjct 3115 GTCCTGAATCTTGGACTTGA-CGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGTAA 3173
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || ||||| |||| || || || ||||| |||||
Sbjct 3174 TCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 96.9 bits (106), Expect = 4e-15
Identities = 125/169 (74%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||||| || ||||| | || || ||||||||||| |||||
Sbjct 3754 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 3813
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||| ||| | || | || |||||||||| |||||| ||||| |||
Sbjct 3814 GATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 3871
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| || || || || | |||||||| ||||| ||
Sbjct 3872 TGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920
>seq2758
Length=2532
Score = 122 bits (134), Expect = 1e-22
Identities = 100/122 (82%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 1677 CGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCG 1618
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||||||||| |||| |||||||||||||| || | || |||||||
Sbjct 1617 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 1558
Query 46499 TC 46500
||
Sbjct 1557 TC 1556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565197787620960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |