Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1666 246 3e-60 seq2177 125 7e-24 seq3589 122 9e-23 seq2758 111 2e-19 >seq1666 Length=59928 Score = 246 bits (272), Expect = 3e-60 Identities = 591/893 (66%), Gaps = 62/893 (7%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 |||||||| || || || ||||| || || || || || || | | |||||| | Sbjct 55200 TTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTC 55259 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723 ||| || || |||||||||| | |||||||||||| || | || | || ||| Sbjct 55260 TCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGC 55319 Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783 || | ||| || || ||||| ||||| || ||||| | || | || |||||| Sbjct 55320 AGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGA 55379 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 || || || || || || || || |||||| || |||| || ||| | ||| Sbjct 55380 GCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATC 55439 Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA--ACATCAAGCAAGCAA 132901 | | ||| | | | | ||||| || || ||| || | | || ||| |||| Sbjct 55440 TTCTCAACAGCCTCGGGGGTCGGC--TTCGACTTGATGTGAGAGAAGAGCAGGCAGGCAA 55497 Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961 ||||| |||| ||||||||| | || ||||| |||||| ||| |||| || |||| Sbjct 55498 AGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCA 55557 Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021 | || || || || |||||||| || |||| ||||| ||| ||||||| |||| Sbjct 55558 TCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAGATACCCT 55617 Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 ||||||| || || || | || ||| | || || | | ||| | |||||||| Sbjct 55618 CGACGGCAGCAAAGGCGATGAGACGCGATGCAAAGGTCGAGTTCTTGTCGCAGATCCAGC 55677 Query 133082 GCAGCGCCCATTCGGCCTT-TTCTT--------------TGACGC--------------- 133111 |||| ||||| |||||||| ||||| |||||| Sbjct 55678 GCAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTATGACGCGTCAGCAAGACGGGT 55737 Query 133112 --------ACG-GCAT----CGTT------TCGATGGCGTTCAACAAACGGAGTTTCTCT 133152 ||| |||| ||| || |||||||| || | | |||| | || Sbjct 55738 AGAGCGCTACGTGCATGTCACGTACTATTGTCAATGGCGTTGAAGAG--GTAGTTGCGCT 55795 Query 133153 TCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210 | || ||| | ||| |||||||| | | ||| || | |||||||| | ||||| Sbjct 55796 GCTTGGGCTCGCTGATGTACGTGTCGATCAAGAGCGAGTATGTCTCCGAGTGGATGTTCT 55855 Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-G 133269 |||| || || || ||||| ||||| || |||||| | ||||||||| |||| | Sbjct 55856 CCATCATAATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAATCTGCACTTCG-GAGCTG 55914 Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329 || |||||||||| || |||||||| ||||| || ||||| || ||||| || ||| Sbjct 55915 AAGCGCTCGACCAAGTTCTCGTTGACAATGCCATCAGACGCGGCAAAGAAGGCGAGAACG 55974 Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTG 133386 || |||||| |||||||| |||||||| |||| ||||||| | |||||| Sbjct 55975 TGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGACGCTTGTTCCAGTCGTGGAGATCCTTG 56034 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||| || | ||||||| ||||||| ||||| |||||||| || |||||||| Sbjct 56035 GACAGATCAATCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 56087 >seq2177 Length=34801 Score = 125 bits (138), Expect = 7e-24 Identities = 142/189 (75%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| || ||| || | |||| | | Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6203 Query 38433 G-AAGCGAC 38440 | | ||||| Sbjct 6204 GTACGCGAC 6212 >seq3589 Length=6346 Score = 122 bits (134), Expect = 9e-23 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| | || |||||| || |||||| | | | |||| | || Sbjct 3922 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 3864 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || ||| | ||| | ||||| ||||| | ||| ||| Sbjct 3863 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGC 3805 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | ||||||||| ||||||||||||||| ||||| ||||||| Sbjct 3804 AAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTT 3745 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 || | || || || || | ||||| Sbjct 3744 CACCTCGTCCTTCGCCTGCGTGGCGG 3719 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| ||||| | |||||| | | | | | || Sbjct 3644 TCACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGT 3585 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGC 38384 || || | || || ||||| || |||||| ||||| ||||| | || | ||| ||| Sbjct 3584 CCAAGATTCAGGATAAGGAGGGCAT-CCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGC 3526 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || || || || |||| |||||||| |||||||||||| || |||||| | || || Sbjct 3525 AAGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTC 3466 Query 38445 CATTTGGTGCTGCGT 38459 || |||||||| ||| Sbjct 3465 CACTTGGTGCTCCGT 3451 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| || |||| ||||||||| ||||| || Sbjct 3117 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAG 3058 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || | ||||||||||||||| ||||| | || ||||| |||||||| Sbjct 3057 GATGGCCGGACGTTGGCCGACTACAACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTC 2998 Query 38457 CGT 38459 ||| Sbjct 2997 CGT 2995 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||| || | || |||||| | | Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || |||| ||||| ||||| || || |||| || Sbjct 3378 GACACGATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCA 3320 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| || ||||| ||||| || |||| | || | |||||||| Sbjct 3319 GCAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAA 3260 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || ||||| |||||||| ||| Sbjct 3259 CATCCAAAAGGAGTCAACCCTGCACTTGGTGCTTCGT 3223 >seq2758 Length=2532 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | ||| ||||| ||||| || Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| || ||||||||||||||| ||||| ||||||| || |||||||| Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675 Query 38457 CGTTTGAGAGGCGG 38470 || || | ||||| Sbjct 1676 CGCCTGCGCGGCGG 1689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136862584320