Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 246 3e-60
seq2177 125 7e-24
seq3589 122 9e-23
seq2758 111 2e-19
>seq1666
Length=59928
Score = 246 bits (272), Expect = 3e-60
Identities = 591/893 (66%), Gaps = 62/893 (7%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|||||||| || || || ||||| || || || || || || | | |||||| |
Sbjct 55200 TTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTC 55259
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGC 132723
||| || || |||||||||| | |||||||||||| || | || | || |||
Sbjct 55260 TCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGC 55319
Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA 132783
|| | ||| || || ||||| ||||| || ||||| | || | || ||||||
Sbjct 55320 AGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGA 55379
Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843
|| || || || || || || || |||||| || |||| || ||| | |||
Sbjct 55380 GCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATC 55439
Query 132844 TCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA--ACATCAAGCAAGCAA 132901
| | ||| | | | | ||||| || || ||| || | | || ||| ||||
Sbjct 55440 TTCTCAACAGCCTCGGGGGTCGGC--TTCGACTTGATGTGAGAGAAGAGCAGGCAGGCAA 55497
Query 132902 AGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCA 132961
||||| |||| ||||||||| | || ||||| |||||| ||| |||| || ||||
Sbjct 55498 AGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCA 55557
Query 132962 TGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCT 133021
| || || || || |||||||| || |||| ||||| ||| ||||||| ||||
Sbjct 55558 TCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAGATACCCT 55617
Query 133022 CGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081
||||||| || || || | || ||| | || || | | ||| | ||||||||
Sbjct 55618 CGACGGCAGCAAAGGCGATGAGACGCGATGCAAAGGTCGAGTTCTTGTCGCAGATCCAGC 55677
Query 133082 GCAGCGCCCATTCGGCCTT-TTCTT--------------TGACGC--------------- 133111
|||| ||||| |||||||| ||||| ||||||
Sbjct 55678 GCAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTATGACGCGTCAGCAAGACGGGT 55737
Query 133112 --------ACG-GCAT----CGTT------TCGATGGCGTTCAACAAACGGAGTTTCTCT 133152
||| |||| ||| || |||||||| || | | |||| | ||
Sbjct 55738 AGAGCGCTACGTGCATGTCACGTACTATTGTCAATGGCGTTGAAGAG--GTAGTTGCGCT 55795
Query 133153 TCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210
| || ||| | ||| |||||||| | | ||| || | |||||||| | |||||
Sbjct 55796 GCTTGGGCTCGCTGATGTACGTGTCGATCAAGAGCGAGTATGTCTCCGAGTGGATGTTCT 55855
Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-G 133269
|||| || || || ||||| ||||| || |||||| | ||||||||| |||| |
Sbjct 55856 CCATCATAATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAATCTGCACTTCG-GAGCTG 55914
Query 133270 AAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACG 133329
|| |||||||||| || |||||||| ||||| || ||||| || ||||| || |||
Sbjct 55915 AAGCGCTCGACCAAGTTCTCGTTGACAATGCCATCAGACGCGGCAAAGAAGGCGAGAACG 55974
Query 133330 TGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTG 133386
|| |||||| |||||||| |||||||| |||| ||||||| | ||||||
Sbjct 55975 TGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGACGCTTGTTCCAGTCGTGGAGATCCTTG 56034
Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||| || | ||||||| ||||||| ||||| |||||||| || ||||||||
Sbjct 56035 GACAGATCAATCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 56087
>seq2177
Length=34801
Score = 125 bits (138), Expect = 7e-24
Identities = 142/189 (75%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| || ||| || | |||| | |
Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6203
Query 38433 G-AAGCGAC 38440
| | |||||
Sbjct 6204 GTACGCGAC 6212
>seq3589
Length=6346
Score = 122 bits (134), Expect = 9e-23
Identities = 153/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| | || |||||| || |||||| | | | |||| | ||
Sbjct 3922 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACG-TCAAG 3864
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| |||| ||||| ||||| || ||| | ||| | ||||| ||||| | ||| |||
Sbjct 3863 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGC 3805
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || || | ||||||||| ||||||||||||||| ||||| |||||||
Sbjct 3804 AAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTT 3745
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| | || || || || | |||||
Sbjct 3744 CACCTCGTCCTTCGCCTGCGTGGCGG 3719
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325
|||| ||||| ||||||||| |||| ||||| | |||||| | | | | | ||
Sbjct 3644 TCACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGT 3585
Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | || || ||||| || |||||| ||||| ||||| | || | ||| |||
Sbjct 3584 CCAAGATTCAGGATAAGGAGGGCAT-CCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGC 3526
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| || || || |||| |||||||| |||||||||||| || |||||| | || ||
Sbjct 3525 AAGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTC 3466
Query 38445 CATTTGGTGCTGCGT 38459
|| |||||||| |||
Sbjct 3465 CACTTGGTGCTCCGT 3451
Score = 100 bits (110), Expect = 3e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| || |||| ||||||||| ||||| ||
Sbjct 3117 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAG 3058
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | || || | ||||||||||||||| ||||| | || ||||| ||||||||
Sbjct 3057 GATGGCCGGACGTTGGCCGACTACAACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTC 2998
Query 38457 CGT 38459
|||
Sbjct 2997 CGT 2995
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| ||||| || | || |||||| | |
Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || |||| ||||| ||||| || || |||| ||
Sbjct 3378 GACACGATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCA 3320
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| || ||||| ||||| || |||| | || | ||||||||
Sbjct 3319 GCAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAA 3260
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || ||||| |||||||| |||
Sbjct 3259 CATCCAAAAGGAGTCAACCCTGCACTTGGTGCTTCGT 3223
>seq2758
Length=2532
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || ||| ||||||| ||||| || || | ||| ||||| ||||| ||
Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||| || ||||||||||||||| ||||| ||||||| || ||||||||
Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675
Query 38457 CGTTTGAGAGGCGG 38470
|| || | |||||
Sbjct 1676 CGCCTGCGCGGCGG 1689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500136862584320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |