Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1576 203 4e-47
seq3856 116 5e-21
seq3558 98.7 1e-15
seq2979 86.0 8e-12
>seq1576
Length=54074
Score = 203 bits (224), Expect = 4e-47
Identities = 386/566 (68%), Gaps = 8/566 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || || ||||| | ||| || || || || || | |||||||| ||||| ||
Sbjct 20121 TCGAAGTCCTCGCCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATGCCC 20062
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | || ||||| || ||||||||||||| ||| || ||||| |||
Sbjct 20061 TCCTCAATGGTCAGAAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAGATGAGGACG 20002
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | | ||||| || |||||||| || || || ||||| || || ||
Sbjct 20001 TTGCGCTCGCCAGTGGTCTTCTTGTCAAGACCGTAGGCAATGGCAGCCGCGGTGGGCTCG 19942
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| ||||| || || ||| || ||||| || | ||||| || || || || ||
Sbjct 19941 TTGATAATGCGGAGGACGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCCTGGCGC 19882
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG--A 7754
|| || |||||||||||||| ||||| || ||||| |||| | || | ||| |
Sbjct 19881 TGGGAGTCGTTAAAGTAGGCAGGGACGGTGACGACAGCGTTGTTAAC---GGTGCCGCAA 19825
Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814
| ||||| || || | || |||| ||||| || ||||||||||| || || || | ||
Sbjct 19824 GGTACGACTCGGCAGTCTCCCTCATCTTGGTCAGGACCATCGATGAGATTTCCTCTGGCG 19765
Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874
|| ||| || || || || || || | || | ||| || ||||
Sbjct 19764 TGAAGACCTTCTCCTCGCCCTTGAACTCGACCTGGATGACGGGCTT---GCCAGCCTTCT 19708
Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934
||| ||||| | | | | ||||| ||| | || |||| ||| ||||| |
Sbjct 19707 CGATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGCACCTCAGCGTCGTTGAACTTGC 19648
Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994
||||| |||||||| || || || || ||||| | ||||||||||| |||||||
Sbjct 19647 GACCGATGAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTCT 19588
Query 7995 TCGCCGCGTCCCCGATAAGACGTTCA 8020
|||||| ||| ||||| ||||| |||
Sbjct 19587 TCGCCGAGTCACCGATCAGACGCTCA 19562
Score = 132 bits (146), Expect = 6e-26
Identities = 259/383 (68%), Gaps = 0/383 (0%)
Strand=Plus/Minus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| ||||| ||||| | || ||||| || || ||||||||||||||
Sbjct 20626 TCACCAGAGAGGATAGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 20567
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | | | ||| || || |||
Sbjct 20566 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACGAGCTTTTGGATCTTGGGG 20507
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || |||||||| | ||||| || | || || || |||||||| | |
Sbjct 20506 ATACGGGTGGAGCCACCGACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTAGCG 20447
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || || || || ||||| ||||| | |||| ||||| |||
Sbjct 20446 TCGCGGAGGACACGCTCAACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 20387
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| |||||||||||||| || || || ||||| |||| || ||| | | || || |||
Sbjct 20386 TCGAAACGTGCACGGGTGATCGAGGTGTAGAAGTCAATACCCTCGAACAGAGAGTCGATT 20327
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || | || ||||| || ||||| || || || ||
Sbjct 20326 TCGATGGAGGTCTGGGCAGAGCTCGAGAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 20267
Query 7370 AAACGACGAAGGGCACGCGGGTT 7392
| ||| || || ||||| | |||
Sbjct 20266 AGACGGCGGAGAGCACGAGAGTT 20244
>seq3856
Length=10951
Score = 116 bits (128), Expect = 5e-21
Identities = 232/343 (68%), Gaps = 7/343 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || | ||| || || | ||
Sbjct 7987 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACGCCC 8046
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574
| || | | | | ||||||||||| ||||||||||| ||||| | | || |
Sbjct 8047 TCGTCGACAGTGAGGATGGAAACATCAAAGGTACCACCACCAAGGTCGTAGACGATGATC 8106
Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631
|||||| | | ||| | ||||| || |||||||| || | || ||||| || |
Sbjct 8107 TGGCGTTCGGAC--TTGTCATCCTTCTTGTCAAGACCGTAGGCCAGGGCAGCCGCAGTGG 8164
Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691
| ||||| | | ||| || ||||||||| ||||| || | || || || || ||
Sbjct 8165 GCTCATTGACGACACGGAGGACGTTCAGGCCGGCAATGGTACCAGCGTCCTTGGTAGCGG 8224
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
|| || | ||||| |||||||||||||| || || || |||| || ||| |
Sbjct 8225 CACGCTGGGCGTCGTTGAAGTAGGCCGGGACAGTCACAACGGCGTTGCGAACAGTCTCGC 8284
Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794
|||| || || |||| |||||||| ||| ||||||||
Sbjct 8285 CGAGGTAGCCCTCAGCGACTTCTTTCATCTTGCCGAGAACCAT 8327
>seq3558
Length=19792
Score = 98.7 bits (108), Expect = 1e-15
Identities = 232/348 (67%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| |||||| | | || || || | ||||| | ||| || || || |||||
Sbjct 995 GAAGTGCTCAAGGAGGTTGGTGTCAAAGTCCTGGCCACCAAGGTGAGTGTCACCAGCGGT 936
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
| ||||| || | ||| || | |||| | | || ||||| || ||||||||
Sbjct 935 GGACTTGACAGTGAAAACACCGCCCTGGATGTGGAGGAGGGACACATCGAAGGTACCACC 876
Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTTATC-GAGACCGTA 7611
||| ||||| | || || |||||| | || | || || | | | |||||||||
Sbjct 875 ACCAAGGTCGTAGATCAGAACGTTCCTCTCCTTCTCAGACTTGCCGGAGCCGAGACCGTA 816
Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671
||||| || || || || || || || || || || || ||||||||| | ||| |
Sbjct 815 GGCGATGGCGGCAGCGGTAGGCTCGTTGATGATGCGGAGGACGTTCAGGCCGGAAATGGC 756
Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || ||||| || || ||||| ||||||||||| || || | |||
Sbjct 755 ACCAGCGTCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTAGGCCGGAACGGTGATGAC 696
Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| | | ||| ||||| || || | | || |||| || |||||
Sbjct 695 GGCCTTCTCGACCTTCTTGCCCAGCTTGGTCTCGGCGACCTCCTTCAT 648
>seq2979
Length=7824
Score = 86.0 bits (94), Expect = 8e-12
Identities = 215/327 (66%), Gaps = 6/327 (2%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||| | ||||| || |||| |||
Sbjct 3312 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 3371
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||| | | | || | ||| || ||||||||||| || || | | | | |
Sbjct 3372 TTCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCAATG 3431
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| | || | || ||| || |||||||| || | ||| || || || || ||
Sbjct 3432 GTCTTTTCCTGCTC------CTTCTCAAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTCG 3485
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | | ||| || ||| || || ||||| | || || || || || || ||
Sbjct 3486 TTGACGACACGGAGGACGTTAAGACCGGCAATCTGACCAGCGTCCTTGGTGGCCTGGCGC 3545
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || ||||| |||||||| ||||| || ||||| |||| | |||| |||||||| |
Sbjct 3546 TGAGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTCTTGACGTTCTTACCCAAG 3605
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
| | || ||| | || ||||| |||
Sbjct 3606 AAGGCCTCGGCGGTCTCCTTCATCTTG 3632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635087165708320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |