Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1576 203 4e-47 seq3856 116 5e-21 seq3558 98.7 1e-15 seq2979 86.0 8e-12 >seq1576 Length=54074 Score = 203 bits (224), Expect = 4e-47 Identities = 386/566 (68%), Gaps = 8/566 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||| || || || || || | |||||||| ||||| || Sbjct 20121 TCGAAGTCCTCGCCACCAAGGTGAGTGTCACCGGCAGTGGACTTGACTTCGAAGATGCCC 20062 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||||| ||| || ||||| ||| Sbjct 20061 TCCTCAATGGTCAGAAGGGAGACATCGAAAGTACCACCACCCAAGTCGAAGATGAGGACG 20002 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | ||||| || |||||||| || || || ||||| || || || Sbjct 20001 TTGCGCTCGCCAGTGGTCTTCTTGTCAAGACCGTAGGCAATGGCAGCCGCGGTGGGCTCG 19942 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || ||||| || || ||| || ||||| || | ||||| || || || || || Sbjct 19941 TTGATAATGCGGAGGACGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCCTGGCGC 19882 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG--A 7754 || || |||||||||||||| ||||| || ||||| |||| | || | ||| | Sbjct 19881 TGGGAGTCGTTAAAGTAGGCAGGGACGGTGACGACAGCGTTGTTAAC---GGTGCCGCAA 19825 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | ||||| || || | || |||| ||||| || ||||||||||| || || || | || Sbjct 19824 GGTACGACTCGGCAGTCTCCCTCATCTTGGTCAGGACCATCGATGAGATTTCCTCTGGCG 19765 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 || ||| || || || || || || | || | ||| || |||| Sbjct 19764 TGAAGACCTTCTCCTCGCCCTTGAACTCGACCTGGATGACGGGCTT---GCCAGCCTTCT 19708 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||| ||||| | | | | ||||| ||| | || |||| ||| ||||| | Sbjct 19707 CGATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGCACCTCAGCGTCGTTGAACTTGC 19648 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| |||||||| || || || || ||||| | ||||||||||| ||||||| Sbjct 19647 GACCGATGAGACGCTTGGCGTCGAAGACGGTGTTGTGAGGGTTCATGGCGACCTGGTTCT 19588 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCA 8020 |||||| ||| ||||| ||||| ||| Sbjct 19587 TCGCCGAGTCACCGATCAGACGCTCA 19562 Score = 132 bits (146), Expect = 6e-26 Identities = 259/383 (68%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| ||||| ||||| | || ||||| || || |||||||||||||| Sbjct 20626 TCACCAGAGAGGATAGCGGCCTGGACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 20567 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | | | ||| || || ||| Sbjct 20566 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAAACGAGCTTTTGGATCTTGGGG 20507 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || |||||||| | ||||| || | || || || |||||||| | | Sbjct 20506 ATACGGGTGGAGCCACCGACGAGGACGATCTCGTGGACGGAGGACTTGTCGATCTTAGCG 20447 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || || || ||||| ||||| | |||| ||||| ||| Sbjct 20446 TCGCGGAGGACACGCTCAACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCACAGCTCC 20387 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || |||||||||||||| || || || ||||| |||| || ||| | | || || ||| Sbjct 20386 TCGAAACGTGCACGGGTGATCGAGGTGTAGAAGTCAATACCCTCGAACAGAGAGTCGATT 20327 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || | || ||||| || ||||| || || || || Sbjct 20326 TCGATGGAGGTCTGGGCAGAGCTCGAGAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 20267 Query 7370 AAACGACGAAGGGCACGCGGGTT 7392 | ||| || || ||||| | ||| Sbjct 20266 AGACGGCGGAGAGCACGAGAGTT 20244 >seq3856 Length=10951 Score = 116 bits (128), Expect = 5e-21 Identities = 232/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || | ||| || || | || Sbjct 7987 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTGGACCTCGAAAACGCCC 8046 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | || | | | | ||||||||||| ||||||||||| ||||| | | || | Sbjct 8047 TCGTCGACAGTGAGGATGGAAACATCAAAGGTACCACCACCAAGGTCGTAGACGATGATC 8106 Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 |||||| | | ||| | ||||| || |||||||| || | || ||||| || | Sbjct 8107 TGGCGTTCGGAC--TTGTCATCCTTCTTGTCAAGACCGTAGGCCAGGGCAGCCGCAGTGG 8164 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | ||||| | | ||| || ||||||||| ||||| || | || || || || || Sbjct 8165 GCTCATTGACGACACGGAGGACGTTCAGGCCGGCAATGGTACCAGCGTCCTTGGTAGCGG 8224 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 || || | ||||| |||||||||||||| || || || |||| || ||| | Sbjct 8225 CACGCTGGGCGTCGTTGAAGTAGGCCGGGACAGTCACAACGGCGTTGCGAACAGTCTCGC 8284 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 |||| || || |||| |||||||| ||| |||||||| Sbjct 8285 CGAGGTAGCCCTCAGCGACTTCTTTCATCTTGCCGAGAACCAT 8327 >seq3558 Length=19792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 232/348 (67%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| |||||| | | || || || | ||||| | ||| || || || ||||| Sbjct 995 GAAGTGCTCAAGGAGGTTGGTGTCAAAGTCCTGGCCACCAAGGTGAGTGTCACCAGCGGT 936 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 | ||||| || | ||| || | |||| | | || ||||| || |||||||| Sbjct 935 GGACTTGACAGTGAAAACACCGCCCTGGATGTGGAGGAGGGACACATCGAAGGTACCACC 876 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT--CTTATC-GAGACCGTA 7611 ||| ||||| | || || |||||| | || | || || | | | ||||||||| Sbjct 875 ACCAAGGTCGTAGATCAGAACGTTCCTCTCCTTCTCAGACTTGCCGGAGCCGAGACCGTA 816 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 ||||| || || || || || || || || || || || ||||||||| | ||| | Sbjct 815 GGCGATGGCGGCAGCGGTAGGCTCGTTGATGATGCGGAGGACGTTCAGGCCGGAAATGGC 756 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || ||||| || || ||||| ||||||||||| || || | ||| Sbjct 755 ACCAGCGTCCTTGGTAGCTTGACGCTGGTTGTCGTTGAAGTAGGCCGGAACGGTGATGAC 696 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | | ||| ||||| || || | | || |||| || ||||| Sbjct 695 GGCCTTCTCGACCTTCTTGCCCAGCTTGGTCTCGGCGACCTCCTTCAT 648 >seq2979 Length=7824 Score = 86.0 bits (94), Expect = 8e-12 Identities = 215/327 (66%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 3312 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 3371 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||| | | | || | ||| || ||||||||||| || || | | | | | Sbjct 3372 TTCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCAAGATCGTAGACGGCAATG 3431 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | || | || ||| || |||||||| || | ||| || || || || || Sbjct 3432 GTCTTTTCCTGCTC------CTTCTCAAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTCG 3485 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | ||| || ||| || || ||||| | || || || || || || || Sbjct 3486 TTGACGACACGGAGGACGTTAAGACCGGCAATCTGACCAGCGTCCTTGGTGGCCTGGCGC 3545 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| | |||| |||||||| | Sbjct 3546 TGAGAGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTTCTTGACGTTCTTACCCAAG 3605 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 | | || ||| | || ||||| ||| Sbjct 3606 AAGGCCTCGGCGGTCTCCTTCATCTTG 3632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635087165708320