Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 147 3e-30
>seq5249
Length=10599
Score = 147 bits (162), Expect = 3e-30
Identities = 368/556 (66%), Gaps = 11/556 (2%)
Strand=Plus/Minus
Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327
|| |||| | |||| || || | || || | ||||| |||| | |||||| | |
Sbjct 8106 ATCGACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGC 8047
Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387
||||| || | ||| || |||| |||||| || |||| ||||| |||||| ||
Sbjct 8046 AGTGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTG 7987
Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447
|| ||| |||||| || ||||| ||||||||| | ||| | || || || |||||
Sbjct 7986 GTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTG 7927
Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTT 110506
| || | |||||| | ||| | | || | |||| ||| ||| | | | | ||||
Sbjct 7926 AGCCTCCAAAATGGCGTACCACAGCTTCTG-GGCGCGGATAGTCTCACGACCACGGCCTT 7868
Query 110507 CCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCT 110566
|| ||||||| | |||| |||||||| || | ||||| ||||| | ||||||
Sbjct 7867 CCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATCGGCGAGACCCG 7808
Query 110567 TCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626
|||| || || || | ||| | ||||| || | ||| || | |||||||||||
Sbjct 7807 GGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACA 7748
Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686
| ||||||| ||||| || |||| | ||| || || ||||||| | || ||||
Sbjct 7747 GATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGT 7688
Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746
| ||| || || | ||| | || || | |||||| || || || |||| || |
Sbjct 7687 TCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAA 7628
Query 110747 TGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGA 110800
| || | | || || |||||| ||| ||||| || ||| ||| |||
Sbjct 7627 AAGCACC---AGGGCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGA 7571
Query 110801 CCCTGAGCATAGGAAT 110816
| | |||||| |||||
Sbjct 7570 CACGGAGCATGGGAAT 7555
Score = 123 bits (136), Expect = 3e-23
Identities = 305/455 (67%), Gaps = 12/455 (3%)
Strand=Plus/Minus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TG 109457
|||| | ||| || || ||||| ||||| || |||||| |||||| || || | ||
Sbjct 8968 GCCTGAGTGCGCAGGTAGTACATGCCCGTCTTCAGACCAAGCTTCCA-GCCAGCAAAGTG 8910
Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTG 109517
||| |||| || ||| | || || || ||| | ||| | ||| ||||||||
Sbjct 8909 CATGGAAGTGATCTTGCCCATCGTAGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTG 8850
Query 109518 ATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTC 109574
||||| || |||||| || || ||||| | ||||| | | || | ||| ||
Sbjct 8849 GTCGATAAAGGCACCACGGTCGGCAGCCATCTGGACGATGTTGCGCT---GAGAAATCTC 8793
Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634
||| ||||||||||| | |||||| || ||||| |||| || | |||||||||
Sbjct 8792 CCACACAGTCTTGTAGAGGGCCTTGATGTCGTCGGGGATGTTGGGAATTTGTTGAATAGA 8733
Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694
|||| | | | ||| | | |||||| | | |||||| ||||| | | ||
Sbjct 8732 GCCATTGGACGCGATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCATGTCGACAAG 8673
Query 109695 ATCGTCAA-CAAG-ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGG 109752
|| | || ||| ||| |||||| || || |||||||| || || || |
Sbjct 8672 GTCCTTAAGCAACCATGG--GTTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAG 8615
Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812
|| ||||| | |||||||| || |||||||| ||| ||| |||||||| ||| ||
Sbjct 8614 TAAATGTTGGAGGTGTAGGGCTCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAG 8555
Query 109813 GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847
|| || ||||||||||| | || | ||||| ||
Sbjct 8554 GCAGTAGGCATGGGAGCAACAAGCAAGCTGTTGCG 8520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588933682074400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |