Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq382 127 2e-24 >seq382 Length=29631 Score = 127 bits (140), Expect = 2e-24 Identities = 270/402 (67%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 29985 GCTCACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30041 ||| ||||| ||||| | ||||| |||||||| || || ||||| | ||| Sbjct 28327 GCTGACGTAGAACTGCGCAAACATG---TGGCACGGCGGCAGGGCCATCTTCTTGAGGTC 28271 Query 30042 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30101 |||||||| |||| || ||||||||||| ||| || |||| | | ||| Sbjct 28270 GGCCGGGTTCCACGCGCTCATGATGATGCGCCGGTCGAAGGGCTTGTGGCGCAGCTTGTC 28211 Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 | | ||| |||||| || || ||| |||| |||||| || ||| ||| Sbjct 28210 GATGACGTCGGCCAGCTGGTCGACGCCCTGTCCCGTGTAGTCGGCGTGGCAGTCGACGTA 28151 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30221 || || || || |||| |||||||||||||||||| || |||||||| ||||| || | Sbjct 28150 GTCGGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCCTCCTCGCG 28091 Query 30222 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30281 ||| | | ||| |||||| || | | || |||||| ||||||||||||| | Sbjct 28090 GTGGCCCAGTCCCACGCTGTCCAGGAACGCCCGCGACCCGTTGCCGTCCCAGATCTTGAT 28031 Query 30282 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30341 |||| || | ||| ||||| ||| || || |||||| |||||||| | Sbjct 28030 CCCCGCGTCTGTCAGCGGCTTGGATGATGTCCTGCCCGAGATGAACCAGAGCAGCTCGGC 27971 Query 30342 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | |||||| | ||||| | |||||| |||||||| || Sbjct 27970 GATGACGGCGCGCAGGAAGACGCGCTTGGTTGTGAGGAGTGG 27929 Score = 113 bits (124), Expect = 4e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 29778 GGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTC 29837 |||||| | ||||||||| || |||| || || || || ||||||||||| ||||| Sbjct 28594 GGGCTCGCGCTCGAGCTGCTGCTGAAGCGCGTCGACATGGTCGAGGTAGACGTGCGCGTC 28535 Query 29838 TCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| |||||| | | || || | || || |||||| |||| ||||| || Sbjct 28534 GCCCATGGTGTGCGTCAGCGAGCCGGGCACCAGGTCGCAGACGTGTGCCAGCATGTGGGT 28475 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 ||| || | ||||||||| ||||| ||||| || ||||| |||||||| | || | ||| Sbjct 28474 GAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCCATGTCGCAGGAGCGCTG 28415 Query 29958 GTAGAGC 29964 ||| ||| Sbjct 28414 GTACAGC 28408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408588974804804