Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5249 217 3e-51 seq1666 167 4e-36 >seq5249 Length=10599 Score = 217 bits (240), Expect = 3e-51 Identities = 942/1465 (64%), Gaps = 61/1465 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 ||||||||| |||| ||||||||||| || ||| |||| || | ||||||||||| Sbjct 8362 GTCAGGGCACCGTG-TAGATGGTCTCGAAAATCTGAATGTTAAGCTGCCTGGCCTCGGGA 8304 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| | ||| || || | || | ||||| || || | || |||| | | Sbjct 8303 GAGTCGAAAGCCATGCGGAGGGCGAGGAAAGCATCGGCAAGGCCGTTGACACCGACAGCA 8244 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC--GCTTCTGGCACGGGATAAAAGTTGACGT 221594 || || | ||| | | ||||| | || || || || ||||| || |||| || Sbjct 8243 ATCGGGCGGTGGCGCATGTTGCT--CTTCCTGGCCTCGGGAACGGGGTAGTGATTGATGT 8186 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGAT 221654 |||| | ||||| |||||| | ||| | |||||| |||||||| | | Sbjct 8185 CGATGATCTTGTTCAGGTTCTTGACAAGGACCTGGGTGACCTCGTGCAGCTTCTTGAAGT 8126 Query 221655 TGAACAC-CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 || | || | | || | | | ||| ||||| | | ||||| | | | Sbjct 8125 TGTAGACACCATTCTC-GACATCG------------ACAAAGGTGGGAAGGGCCAGGGAG 8079 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||| || || || |||||||| | || |||| | ||||| || ||| Sbjct 8078 GCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCACAGG 8019 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || ||||| ||||||| || || || |||||| ||| |||||||||| Sbjct 8018 TTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTG 7959 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTC 221892 |||||||| ||||| ||| ||||| ||||||| ||| ||| || ||| || ||| Sbjct 7958 TAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGCTTC 7899 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 | ||||| | || ||| ||| ||| | | | || |||| ||| ||| Sbjct 7898 T-GGGCGCGGATAGT-CTCACGAC--CACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCG-GGACACATCAGAC 222011 ||||||| || ||||| | ||| | || || || ||| | | || ||||| ||| Sbjct 7842 CTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGG-GGCCTCGTGAGGGCACATGAGAG 7784 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 |||| | ||| | | ||| | || |||||| || || || | |||||| || | | Sbjct 7783 TCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGA 7724 Query 222072 AGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 | | || | || ||| | ||| ||| |||| ||| || | || || | || Sbjct 7723 ACAAGTCGC--GTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGG 7666 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 || | ||| |||||||| |||||||| |||| ||| | ||| || || ||||||||||| Sbjct 7665 GAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCC 7606 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||| | || | | | || | |||| ||| || || | || | ||| | Sbjct 7605 ACCCTGGT----CAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGC 7550 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305 ||||||| |||||||| || |||||| | ||| | || | | || | Sbjct 7549 CGTTGGAGGTGCCGTTGGTACCAGCAATGTAGG---AGCCAGTTGAACGGATGC-GGTGG 7494 Query 222306 AC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 || | ||||| |||||||| || || |||||||| || ||||||| ||||| Sbjct 7493 ACGTTGAGACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCG 7434 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||||||||| || ||||||||| | || | || || || || | | ||| | Sbjct 7433 TAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGC 7374 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 |||| || || ||||| |||| |||||| ||||| |||||||| ||||||| Sbjct 7373 TTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATC 7314 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTC 222541 | | |||||| || | | | | | ||||| || ||||| || | ||| | | Sbjct 7313 AAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGC 7254 Query 222542 ATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGA--GCTGGAGAGCAGGTACGATT 222599 || ||||| ||| || || || || ||| | | | || ||||| ||| || Sbjct 7253 ATAATCATGTGCTGTGGTCTTTCGGCA--ACCTTGCCATCGATGCGGAGCAAGTATGACC 7196 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 | || || |||||||| |||||||| | | || ||||| | | ||| || | ||| | Sbjct 7195 TCTCGAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCG 7136 Query 222660 CGTCCAGCTC--CGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCT---CAGACACGAG 222714 || ||||| || | |||||| | | | | ||| | | || || || | | Sbjct 7135 AGTTGAGCTCATCGGC--GTGCTTCATGATAATATCGTACGTTCCCTTGCCAATCATG-G 7079 Query 222715 GGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGA 222774 | ||| || | ||| | | |||||| | || |||||| || | | | ||| | || Sbjct 7078 GCGAGTGT--ACCTTGTTCTTGGGGTTTATGTAGTGGTAGAGATCCGAGATGACGAGCGA 7021 Query 222775 GAACGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACC 222834 |||| | ||||||||||| ||||| || ||||| || || | ||||| ||| | Sbjct 7020 AAACGGCTTCTTGGTCTGCTTGTGGAGATTTGAGACGGCAATGCG-GGCGCCAGGATGGC 6962 Query 222835 ATAGTCAGGGTGCACGGTGGTCATG 222859 ||||| ||||| ||||||||| Sbjct 6961 GTAGTCGGGGTGGGTAGTGGTCATG 6937 >seq1666 Length=59928 Score = 167 bits (184), Expect = 4e-36 Identities = 342/514 (67%), Gaps = 5/514 (1%) Strand=Plus/Minus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| ||||||||| |||||| ||||| || |||||| | | ||| | | || Sbjct 55711 CCCTGCATCAAGAAGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAACTCGACC 55652 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||| || | ||||||||||| || ||||| ||||| |||||||| || || Sbjct 55651 TTTGCATCGCGTCTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC 55592 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||||||| || || ||||| || ||| || ||||||||| Sbjct 55591 GCGTCCATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCTGACATTCTCCAACGAG 55532 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCAC 26049 |||||| | |||||||| | |||| || |||||||||||||||| | | ||| Sbjct 55531 CTCATCTCTCGCGACGAGGGCATGCACACCGACTTTGCCTGCCTGCTCTTCTC---TCAC 55475 Query 26050 TTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | || || | | ||| | || | | ||||| ||||| || ||||| Sbjct 55474 ATCAAGTCGAAGCCGACCCCCGAGGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATT 55415 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 ||| | ||||| | | ||||||||| | ||| Sbjct 55414 GAGCAAGAGTTCCTGACTGACGCTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGCCTC 55355 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 ||| |||| |||||||||| ||| || |||| ||||| ||| | ||| || | | Sbjct 55354 ATGTGCCAGTACATTGAGTTTGTTGCTGACCGCCTGCTGGTGGC-GCTTGGCAACAAGAA 55296 Query 26229 ACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGAC 26288 | ||||| | | ||||| |||||||| ||||| ||||| ||| | | || ||||| Sbjct 55295 GCACTACAACTCTACCAACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGAC 55236 Query 26289 CAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||| || ||| | || || ||||||||| Sbjct 55235 CAACTTCTTCGAGAAGCGCGTTGGTGACTATCAA 55202 Score = 116 bits (128), Expect = 7e-21 Identities = 169/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 56096 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATCTG 56037 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAA 25592 ||||||| | ||| |||| || || ||| | | ||||||| || | ||| || Sbjct 56036 TCCAAGGATCTCCACGACTGGAACAAGCGTCTGAACGACGACGAGC-GCTTCTTCATCTC 55978 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || |||||||| || |||||||| || || |||||||| || |||| | Sbjct 55977 CCACGTTCTCGCCTTCTTTGCCGCGTCTGATGGCATTGTCAACGAGAACTTGGTCGAGCG 55918 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | ||||||||| ||||| || ||||||||||||||||| Sbjct 55917 CTTCAGCTCCGAAGTGCAGATTCCCGAGGCTCGCTGCTTCTACGGTTTCCAGAT 55864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928778062501120