Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4078 113 1e-19 seq5249 95.1 4e-14 >seq4078 Length=18759 Score = 113 bits (124), Expect = 1e-19 Identities = 193/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 302564 TCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTT 302623 |||| | |||||||| ||||| ||||| |||||||| || || || || || | Sbjct 8886 TCATGACGTCTTCCAGTGCCTTGACCAAACGGCGCTGAATGTAGCCCGTCTCAGCGGTCT 8827 Query 302624 TTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG 302683 | ||||| |||||||| ||||| |||||||| |||| || ||||| || | ||| | Sbjct 8826 TGACAGCAGTATCAATCAGACCCTCACGACCAGCCATGGCGTGGAAAAAGAACTCCGTGG 8767 Query 302684 GTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 | || || | | | ||| | | || || |||||||| ||||||| | || Sbjct 8766 GAGTCAGTCCGCGCAGGTAAGAGTTTTGGACAAAGCCACGCGCAGCGGGCGAGTAATCAT 8707 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||| |||||||||||||| | || || | ||| | || || ||||| || || | Sbjct 8706 CCTTGGTGAAGTGTGGCAGGGTGCGGTACTTGAACCCGAACGGAATGCGCTTGCCTTCGA 8647 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | ||||||||| | | | |||| |||||||| || Sbjct 8646 CCGACTGCTGTCCGACCAAAGCCGTCATTTGCGAAATGTT 8607 >seq5249 Length=10599 Score = 95.1 bits (104), Expect = 4e-14 Identities = 352/547 (64%), Gaps = 15/547 (3%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 |||| || |||||||||||||||||||| || || ||||| || | ||||| |||| Sbjct 8044 TGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGT 7985 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTG 155748 | || | ||| ||||| |||||||| || ||| | ||| | || ||||| |||| | Sbjct 7984 TGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAG 7925 Query 155749 CGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCG 155808 | |||| ||| ||| || | |||| || || | ||||||| Sbjct 7924 CCTCCAAAATGGCGTACCACAGCTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCC 7865 Query 155809 ACTCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || || ||||||| | | || || || ||||| ||| || || ||| Sbjct 7864 TCTCGTACCTCTCATACAGC-TCCTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGG 7806 Query 155868 CACTTATCGGGGCAAAACAGCGACCAA-----ATTTTATTACCGATTACACGCTCCATAA 155922 || | ||||| | || | |||| |||| | || ||||||| ||| | Sbjct 7805 GCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCT--CG---ACACGCTTCATGA 7751 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGT 155982 | | |||| |||| | || ||||| | ||| | ||| ||| || | |||| Sbjct 7750 ACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGT 7691 Query 155983 GATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAG 156042 | ||||| || || || | ||| | || | || |||||||| || || | Sbjct 7690 GGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGG 7631 Query 156043 CAAAACTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGA 156099 ||||| |||| | | ||||||||||| || || || ||||| || || ||| ||| Sbjct 7630 CAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGA 7571 Query 156100 CACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| ||||| ||||| | || ||||| ||||| ||||| || ||| | || |||| Sbjct 7570 CACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAG 7511 Query 156160 ATGAGCG 156166 ||| || Sbjct 7510 TTGAACG 7504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471709206153076