Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1666 203 4e-46 seq2393 170 2e-36 seq4947 131 2e-24 seq5249 125 9e-23 seq4078 102 1e-15 >seq1666 Length=59928 Score = 203 bits (224), Expect = 4e-46 Identities = 232/308 (75%), Gaps = 8/308 (3%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || |||||| |||||| |||||||||||||| | |||||| || |||||| Sbjct 55206 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATG 55265 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | ||| ||||||| | ||||||||||| | | || |||| | | ||||||||| Sbjct 55266 AAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGG 55325 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| |||||||||||||||||||| ||||||||||||| || || || Sbjct 55326 TCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACG 55385 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 || || | || ||| ||||||| ||| ||||||||||||||||| ||||||| || Sbjct 55386 GGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATCT-TCTC 55444 Query 868940 GGCA-CGTCGGCCGAGGGCTT---GTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995 || | |||| | ||||| |||| | | | | ||||||||||||||||||| Sbjct 55445 AACAGCCTCGGGGGTCGGCTTCGACTTGATGTG---AGAGAAGAGCAGGCAGGCAAAGTC 55501 Query 868996 GCAGTGCA 869003 | ||||| Sbjct 55502 GGTGTGCA 55509 Score = 111 bits (122), Expect = 2e-18 Identities = 145/196 (74%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | |||||| || | || || ||||| || || |||||| Sbjct 55512 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTC 55571 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||| ||||||| ||| ||| ||| ||| ||||| ||||||||||| ||||| Sbjct 55572 TTGAGCCAGAAGATGGACGC-GAAGGAGCCGCTGAAGAAGATACCCTCGACGGCAGCAAA 55630 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | ||||||| ||| |||||| |||||| | ||||| |||||| || || Sbjct 55631 GGCGATGAGACGCGATGCAAAG--GTCGAG----TTCTTGTCGCAGATCCAGCGCAGAGC 55684 Query 869356 CCAGTCGGCCTTTTTC 869371 |||||||||||| ||| Sbjct 55685 CCAGTCGGCCTTCTTC 55700 >seq2393 Length=18100 Score = 170 bits (188), Expect = 2e-36 Identities = 329/476 (69%), Gaps = 16/476 (3%) Strand=Plus/Minus Query 1852165 GGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTC 1852224 ||| || || || | |||||| || ||||| || |||| |||||||||| |||||| Sbjct 5086 GGCGAAGATTTTCCTCTGGTCCACACCACCAAATTGTACGTCAACGTCGAGGTACTGCTC 5027 Query 1852225 GTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCT 1852283 ||| ||||||||||| |||||||||| | | | ||| || |||||| | || | || Sbjct 5026 GTCCAGGGCCTGCATCAGCGGGTAGATGAGGCCGGACAGCAGGGGGTTGTCCGT-CTGCT 4968 Query 1852284 TGACCACCTGAGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCA-CGTGCGCCGCGAGT 1852339 |||| |||| || | ||| |||||| ||||| ||||| || |||| | || Sbjct 4967 TGACAACCTCGGCACCTGCCCTCTTTGCGTCGTGCTCGGTGGTCATGGTGCTC----AGC 4912 Query 1852340 CGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCAC---TGGTACTCGGTGCCGCGCACAAAC 1852396 || ||||| | | |||| ||| || || ||||||||| |||| |||||||| Sbjct 4911 CGCAGCAGGTCCATCATGTAG--TCCGACG-ACTTTTGGTACTCGCTGCCCAGCACAAAC 4855 Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTAC 1852456 || || | | | | || |||||| | | || | | || | || |||||| ||| Sbjct 4854 TCCAGCCGGTCGACCGACACGCCCACGGCCTTCAAGCTCTCCGTTATCACAAACTTGTAG 4795 Query 1852457 CAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516 | | ||||| | ||| || || |||| |||| ||||||||| ||||| Sbjct 4794 TACTTGGCGCGGTGGTTGACGAGCTCAATTGGCGCCTTGAGGTTGTCGAGAAAAGCGTGG 4735 Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576 | |||||| | || |||||||| ||||||| ||||| || || | ||| | || | Sbjct 4734 ATGTCGGCCAGCAGAATCTTGACGTGACAGCCCGCCTGCAGGAACTGGGCAATCTTCAGC 4675 Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632 || |||||||||||||| ||||||| ||||||| ||||||||||| || || Sbjct 4674 ATTGGCACAAAGTAGCCGCAGTGCGGGCGTCCCGTCGTTGCCGTGCCCCAGTAGAT 4619 >seq4947 Length=12178 Score = 131 bits (144), Expect = 2e-24 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||| ||||||||| | ||||| || | || |||||| |||| |||||| Sbjct 11191 GCTGCCAACTACCTGGACATCAAGGCGCTGCTGGACGTCGGTTGCAAGACTGTCGCCAAC 11250 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||||||||||| || ||||||||||||||||| ||||| || ||| Sbjct 11251 ATGATCAAGGGCAAGTCGCCTGATGAGATCCGCAAGACCTTCAACATTCAGAACG 11305 >seq5249 Length=10599 Score = 125 bits (138), Expect = 9e-23 Identities = 331/509 (65%), Gaps = 14/509 (3%) Strand=Plus/Minus Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158 ||||||| |||| ||||||| | || | |||||| || || || ||| | | Sbjct 8104 CGACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAG 8045 Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGG 1628217 ||| ||| ||||| ||||||||||| | || | ||||||||||||| ||| Sbjct 8044 TGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAA-TGGTACCCAGGTTCTTTTGG 7986 Query 1628218 TTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGC 1628277 ||| | | ||||| |||||||||| ||||||| |||| |||||||||| |||| Sbjct 7985 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGA 7926 Query 1628278 GCCGCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTC---CGCGCGCGG 1628331 ||| | | ||||| |||| | ||||| |||||| | |||| || | ||| Sbjct 7925 GCCTCCAAAATGGCGTACCACAGCTTCTGG-GCGCGG-----ATAGTCTCACGACCACGG 7872 Query 1628332 CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGG 1628391 || | ||||| | |||||||| ||| || Sbjct 7871 CCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATCGGCGAGA 7812 Query 1628392 CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATA 1628451 || || |||||| || || | ||| | ||| ||||| | | | || ||| Sbjct 7811 CCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATG 7752 Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511 || || ||| |||||| ||||| || | |||||| || ||| ||| ||||| ||| Sbjct 7751 AACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCG 7692 Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571 |||||||| ||||||||| || || | |||||||||||| |||||||||||| | Sbjct 7691 TGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATG 7632 Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| || || ||||||| ||| || Sbjct 7631 GCAAAAGCACCAGGGCGCTTGTTGCCACC 7603 Score = 123 bits (136), Expect = 3e-22 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| |||| ||||||||||| | ||||||||||| Sbjct 7602 CTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGA 7543 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||| || || | ||||| ||| | | || | ||| || | || Sbjct 7542 GGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACC 7483 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || ||||||| |||||| || | || || ||||| ||||||||||||||||| Sbjct 7482 GATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTC 7423 Query 1630245 GATCGAGTCGGCCTTCATGTC 1630265 ||| ||| |||||||||| Sbjct 7422 GATGCTGTCCTCCTTCATGTC 7402 >seq4078 Length=18759 Score = 102 bits (112), Expect = 1e-15 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 509045 CGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCG-AGATGTTTCTGCA 509103 || |||||||| | ||||| ||| |||||| || | ||| | || || | ||| | || Sbjct 8727 CGTGGCTTTGTCCAAAACTCTTACCTGCGCGGACTGA-CTCCCACGGAGTTCTTTTTCCA 8785 Query 509104 CATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 509163 | || | || || ||||| || | || || || |||||||| || ||||||||||| Sbjct 8786 CGCCATGGCTGGTCGTGAGGGTCTGATTGATACTGCTGTCAAGACCGCTGAGACGGGCTA 8845 Query 509164 CATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCG 509222 ||| |||||||| | ||||| | |||| || | || || |||| || |||| || Sbjct 8846 CATTCAGCGCCGTTTGGTCAAGGCACTGGA-AGACGTCATGACCAAGTACGACGGCACCG 8904 Query 509223 TGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 |||||||| || |||||||| || || || | ||| || | ||||| Sbjct 8905 TGCGCAACTCCCTTGGCGACATTGTACAATTCGTCTACGGAGAGGACGG 8953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106667492202116