Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 203 4e-46
seq2393 170 2e-36
seq4947 131 2e-24
seq5249 125 9e-23
seq4078 102 1e-15
>seq1666
Length=59928
Score = 203 bits (224), Expect = 4e-46
Identities = 232/308 (75%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759
|| || || |||||| |||||| |||||||||||||| | |||||| || ||||||
Sbjct 55206 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATG 55265
Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819
| ||| ||||||| | ||||||||||| | | || |||| | | |||||||||
Sbjct 55266 AAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGG 55325
Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879
|| || |||||||| |||||||||||||||||||| ||||||||||||| || || ||
Sbjct 55326 TCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACG 55385
Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939
|| || | || ||| ||||||| ||| ||||||||||||||||| ||||||| ||
Sbjct 55386 GGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATCT-TCTC 55444
Query 868940 GGCA-CGTCGGCCGAGGGCTT---GTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTC 868995
|| | |||| | ||||| |||| | | | | |||||||||||||||||||
Sbjct 55445 AACAGCCTCGGGGGTCGGCTTCGACTTGATGTG---AGAGAAGAGCAGGCAGGCAAAGTC 55501
Query 868996 GCAGTGCA 869003
| |||||
Sbjct 55502 GGTGTGCA 55509
Score = 111 bits (122), Expect = 2e-18
Identities = 145/196 (74%), Gaps = 11/196 (6%)
Strand=Plus/Plus
Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239
|| ||||||||| ||| | |||||| || | || || ||||| || || ||||||
Sbjct 55512 CCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCATCAGACCACGCTTC 55571
Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
|||||||| ||||||| ||| ||| ||| ||| ||||| ||||||||||| |||||
Sbjct 55572 TTGAGCCAGAAGATGGACGC-GAAGGAGCCGCTGAAGAAGATACCCTCGACGGCAGCAAA 55630
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355
| ||||||| ||| |||||| |||||| | ||||| |||||| || ||
Sbjct 55631 GGCGATGAGACGCGATGCAAAG--GTCGAG----TTCTTGTCGCAGATCCAGCGCAGAGC 55684
Query 869356 CCAGTCGGCCTTTTTC 869371
|||||||||||| |||
Sbjct 55685 CCAGTCGGCCTTCTTC 55700
>seq2393
Length=18100
Score = 170 bits (188), Expect = 2e-36
Identities = 329/476 (69%), Gaps = 16/476 (3%)
Strand=Plus/Minus
Query 1852165 GGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTC 1852224
||| || || || | |||||| || ||||| || |||| |||||||||| ||||||
Sbjct 5086 GGCGAAGATTTTCCTCTGGTCCACACCACCAAATTGTACGTCAACGTCGAGGTACTGCTC 5027
Query 1852225 GTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTG-CGGTCCATCT 1852283
||| ||||||||||| |||||||||| | | | ||| || |||||| | || | ||
Sbjct 5026 GTCCAGGGCCTGCATCAGCGGGTAGATGAGGCCGGACAGCAGGGGGTTGTCCGT-CTGCT 4968
Query 1852284 TGACCACCTGAGCGGCGGCC--TTTTGCGCCGTGC-CGGTGCGCA-CGTGCGCCGCGAGT 1852339
|||| |||| || | ||| |||||| ||||| ||||| || |||| | ||
Sbjct 4967 TGACAACCTCGGCACCTGCCCTCTTTGCGTCGTGCTCGGTGGTCATGGTGCTC----AGC 4912
Query 1852340 CGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCAC---TGGTACTCGGTGCCGCGCACAAAC 1852396
|| ||||| | | |||| ||| || || ||||||||| |||| ||||||||
Sbjct 4911 CGCAGCAGGTCCATCATGTAG--TCCGACG-ACTTTTGGTACTCGCTGCCCAGCACAAAC 4855
Query 1852397 TCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAGCATGGCCTTGATGGCAAACTCGTAC 1852456
|| || | | | | || |||||| | | || | | || | || |||||| |||
Sbjct 4854 TCCAGCCGGTCGACCGACACGCCCACGGCCTTCAAGCTCTCCGTTATCACAAACTTGTAG 4795
Query 1852457 CAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGC 1852516
| | ||||| | ||| || || |||| |||| ||||||||| |||||
Sbjct 4794 TACTTGGCGCGGTGGTTGACGAGCTCAATTGGCGCCTTGAGGTTGTCGAGAAAAGCGTGG 4735
Query 1852517 ACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAG 1852576
| |||||| | || |||||||| ||||||| ||||| || || | ||| | || |
Sbjct 4734 ATGTCGGCCAGCAGAATCTTGACGTGACAGCCCGCCTGCAGGAACTGGGCAATCTTCAGC 4675
Query 1852577 ATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATAT 1852632
|| |||||||||||||| ||||||| ||||||| ||||||||||| || ||
Sbjct 4674 ATTGGCACAAAGTAGCCGCAGTGCGGGCGTCCCGTCGTTGCCGTGCCCCAGTAGAT 4619
>seq4947
Length=12178
Score = 131 bits (144), Expect = 2e-24
Identities = 98/115 (85%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||||| ||||||||| | ||||| || | || |||||| |||| ||||||
Sbjct 11191 GCTGCCAACTACCTGGACATCAAGGCGCTGCTGGACGTCGGTTGCAAGACTGTCGCCAAC 11250
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
|||||||||||||||||||| || ||||||||||||||||| ||||| || |||
Sbjct 11251 ATGATCAAGGGCAAGTCGCCTGATGAGATCCGCAAGACCTTCAACATTCAGAACG 11305
>seq5249
Length=10599
Score = 125 bits (138), Expect = 9e-23
Identities = 331/509 (65%), Gaps = 14/509 (3%)
Strand=Plus/Minus
Query 1628099 CGACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACG 1628158
||||||| |||| ||||||| | || | |||||| || || || ||| | |
Sbjct 8104 CGACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAG 8045
Query 1628159 AAAACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGG 1628217
||| ||| ||||| ||||||||||| | || | ||||||||||||| |||
Sbjct 8044 TGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAA-TGGTACCCAGGTTCTTTTGG 7986
Query 1628218 TTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGC 1628277
||| | | ||||| |||||||||| ||||||| |||| |||||||||| ||||
Sbjct 7985 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGA 7926
Query 1628278 GCCGCGACGATGGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTC---CGCGCGCGG 1628331
||| | | ||||| |||| | ||||| |||||| | |||| || | |||
Sbjct 7925 GCCTCCAAAATGGCGTACCACAGCTTCTGG-GCGCGG-----ATAGTCTCACGACCACGG 7872
Query 1628332 CCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGG 1628391
|| | ||||| | |||||||| ||| ||
Sbjct 7871 CCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATCGGCGAGA 7812
Query 1628392 CCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATA 1628451
|| || |||||| || || | ||| | ||| ||||| | | | || |||
Sbjct 7811 CCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATG 7752
Query 1628452 AAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCG 1628511
|| || ||| |||||| ||||| || | |||||| || ||| ||| ||||| |||
Sbjct 7751 AACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCG 7692
Query 1628512 TGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAG 1628571
|||||||| ||||||||| || || | |||||||||||| |||||||||||| |
Sbjct 7691 TGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATG 7632
Query 1628572 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
||||| || || ||||||| ||| ||
Sbjct 7631 GCAAAAGCACCAGGGCGCTTGTTGCCACC 7603
Score = 123 bits (136), Expect = 3e-22
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| |||||||| || |||| ||| |||| ||||||||||| | |||||||||||
Sbjct 7602 CTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGA 7543
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||| || || | ||||| ||| | | || | ||| || | ||
Sbjct 7542 GGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACC 7483
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || ||||||| |||||| || | || || ||||| |||||||||||||||||
Sbjct 7482 GATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTC 7423
Query 1630245 GATCGAGTCGGCCTTCATGTC 1630265
||| ||| ||||||||||
Sbjct 7422 GATGCTGTCCTCCTTCATGTC 7402
>seq4078
Length=18759
Score = 102 bits (112), Expect = 1e-15
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 509045 CGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCG-AGATGTTTCTGCA 509103
|| |||||||| | ||||| ||| |||||| || | ||| | || || | ||| | ||
Sbjct 8727 CGTGGCTTTGTCCAAAACTCTTACCTGCGCGGACTGA-CTCCCACGGAGTTCTTTTTCCA 8785
Query 509104 CATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 509163
| || | || || ||||| || | || || || |||||||| || |||||||||||
Sbjct 8786 CGCCATGGCTGGTCGTGAGGGTCTGATTGATACTGCTGTCAAGACCGCTGAGACGGGCTA 8845
Query 509164 CATCCAGCGCCGGTGCATCAAGTCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCG 509222
||| |||||||| | ||||| | |||| || | || || |||| || |||| ||
Sbjct 8846 CATTCAGCGCCGTTTGGTCAAGGCACTGGA-AGACGTCATGACCAAGTACGACGGCACCG 8904
Query 509223 TGCGCAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271
|||||||| || |||||||| || || || | ||| || | |||||
Sbjct 8905 TGCGCAACTCCCTTGGCGACATTGTACAATTCGTCTACGGAGAGGACGG 8953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106667492202116
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |