Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 199 6e-45
seq2393 178 2e-38
seq5249 120 5e-21
seq4947 113 7e-19
seq4078 100 5e-15
>seq1666
Length=59928
Score = 199 bits (220), Expect = 6e-45
Identities = 237/317 (75%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| |||||||| ||| || || |||||| |||||| |||||||||||||| | ||
Sbjct 55189 TGACACCCGCCTTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGA 55248
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
|||| || |||||| | ||| ||||||| | ||||||||||| | || |
Sbjct 55249 GCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAA 55308
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
||| | | ||||||||||| || || || ||||||||||||||||||||| | |||||||
Sbjct 55309 GCGCCACCAGCAGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCA 55368
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || ||||| || | || | | ||||||| ||| |||||||||||||
Sbjct 55369 TGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCT 55428
Query 794131 CGATGATGATCTGCCTGGGCA-CGTCGGACGACGGCTTGTCGAC--GAGCATCGTGTAGA 794187
||| ||||||| || || | |||| | ||||| ||||| || | | |||
Sbjct 55429 CGACAATGATCT-TCTCAACAGCCTCGGGGGTCGGCT--TCGACTTGATGTGAGAGAAGA 55485
Query 794188 GCAGGCAGGCAAAGTCG 794204
|||||||||||||||||
Sbjct 55486 GCAGGCAGGCAAAGTCG 55502
>seq2393
Length=18100
Score = 178 bits (196), Expect = 2e-38
Identities = 351/507 (69%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 2411475 GTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCC 2411534
||| |||||| |||||| || || | ||| ||||| || | |||||| ||
Sbjct 5119 GTATCCCAGCTTCGGCAGCGCCTCCTTGGCCAGGGCGAAGATTTTCCTCTGGTCCACACC 5060
Query 2411535 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAC 2411594
||||| || |||| |||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 5059 ACCAAATTGTACGTCAACGTCGAGGTACTGCTCGTCCAGGGCCTGCATCAGCGGGTAGAT 5000
Query 2411595 GAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGCGGCC--TTTTG 2411651
|||| | ||| | |||||| | || | |||||| |||| ||| | ||| ||||
Sbjct 4999 GAGGCCGGACAGCAGGGGGTTGTCCGT-CTGCTTGACAACCTCGGCACCTGCCCTCTTTG 4941
Query 2411652 CGCCGTGC-CGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAG-GCGGCG 2411709
|| ||||| || ||||| | | || |||| |||| ||||| | | ||||| || ||
Sbjct 4940 CGTCGTGCTCGGTGGTCATG-GTGC--TCAGCCGCAGCAGGTCCATCATGTAGTCCGACG 4884
Query 2411710 CCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGC 2411769
| | ||||| |||||||| ||||||| || || || || | || ||||| | | |
Sbjct 4883 AC-TTTTGGTACTCGCTGCCCAGCACAAACTCCAGCCGGTCGACCGACACGCCCACGGCC 4825
Query 2411770 TGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCAC 2411829
| | | || | || |||||| ||| | | ||||| | |||||| ||
Sbjct 4824 TTCAAGCTCTCCGTTATCACAAACTTGTAGTACTTGGCGCGGTGGTTGACGAGCTCAATT 4765
Query 2411830 GGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACAT 2411889
|||| |||| |||||||| ||||| | |||||| | || ||| | || ||||
Sbjct 4764 GGCGCCTTGAGGTTGTCGAGAAAAGCGTGGATGTCGGCCAGCAGAATCTTGACGTGACAG 4705
Query 2411890 CCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTT 2411948
|| ||||| || || | ||| | || | || |||||||||||||| ||| |||| |
Sbjct 4704 CCCGCCTGCAGGAACTGGGCAATCTTCAGCATTGGCACAAAGTAGCCGCAGTGCGGGCGT 4645
Query 2411949 GCCCGTCGGCGCGGTGCCCCAATAAAT 2411975
||||||| || |||||||| || ||
Sbjct 4644 -CCCGTCGTTGCCGTGCCCCAGTAGAT 4619
>seq5249
Length=10599
Score = 120 bits (132), Expect = 5e-21
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| || ||||| || |||| ||| |||| ||||||||||| | |||||||||||
Sbjct 7602 CTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGA 7543
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||| || || | ||||| ||| | | || | ||| || | ||
Sbjct 7542 GGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACC 7483
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || ||||||| |||||| || | || || | || || || ||||||||||||||
Sbjct 7482 GATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTC 7423
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755
||| ||| |||||||||| | || ||||| ||
Sbjct 7422 GATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGA 7387
Score = 114 bits (126), Expect = 2e-19
Identities = 271/410 (66%), Gaps = 14/410 (3%)
Strand=Plus/Minus
Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669
|||| |||||||||| |||||||| | ||||| |||||||||| |||||| |||
Sbjct 8005 TGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGG 7946
Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727
| || |||||| |||| ||| | ||||| |||| | || | |||||| |
Sbjct 7945 GGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGCTTCTGGGCGCGGATA- 7887
Query 2071728 CGAGGTC-CTCG--CGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGC 2071784
||| | || | ||||| | | || | ||||| || |
Sbjct 7886 ----GTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTC 7831
Query 2071785 GCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCC 2071844
||||| | ||| || || || |||||| ||||| | ||| | ||| ||||||
Sbjct 7830 GCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTT 7771
Query 2071845 AGTCACCACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGC 2071902
| | || || ||| ||||| || | || ||||||| |||| || | |||||
Sbjct 7770 TTGCTCGACACGCTTCATGAACAGATCAGGAAC--CCACAGGGCGTAGAACAAGTCGCGT 7713
Query 2071903 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCG 2071962
|| ||| ||| ||||| ||||||||||| |||||||| || || || |||||||
Sbjct 7712 GCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCG 7653
Query 2071963 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||| |||||||||||| |||||| || || ||||||| ||| ||
Sbjct 7652 TGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 7603
>seq4947
Length=12178
Score = 113 bits (124), Expect = 7e-19
Identities = 94/115 (82%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| ||||||||||| ||||||||| | || || || | || |||||||| || ||||||
Sbjct 11191 GCTGCCAACTACCTGGACATCAAGGCGCTGCTGGACGTCGGTTGCAAGACTGTCGCCAAC 11250
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||||||||||||||| || || |||||||||||||| ||||| || |||
Sbjct 11251 ATGATCAAGGGCAAGTCGCCTGATGAGATCCGCAAGACCTTCAACATTCAGAACG 11305
>seq4078
Length=18759
Score = 100 bits (110), Expect = 5e-15
Identities = 162/228 (71%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 431031 CGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCG-AGATGTTTCTGCA 431089
|| |||||||| | ||||| ||| |||||| || | ||| | || || | ||| | ||
Sbjct 8727 CGTGGCTTTGTCCAAAACTCTTACCTGCGCGGACTGA-CTCCCACGGAGTTCTTTTTCCA 8785
Query 431090 CATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 431149
| || | || || |||||||| | || || || |||||||| || |||||||||||
Sbjct 8786 CGCCATGGCTGGTCGTGAGGGTCTGATTGATACTGCTGTCAAGACCGCTGAGACGGGCTA 8845
Query 431150 CATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCG 431208
||| ||||| || | |||| | |||| || | || || |||| || |||| ||
Sbjct 8846 CATTCAGCGCCGTTTGGTCAAGGCACTGGA-AGACGTCATGACCAAGTACGACGGCACCG 8904
Query 431209 TGCGCAACGCCAACGGCGACATTGTCCAGTTTGCCTATGGCGGCGACG 431256
|||||||| || ||||||||||| || || | ||| || | ||||
Sbjct 8905 TGCGCAACTCCCTTGGCGACATTGTACAATTCGTCTACGGAGAGGACG 8952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915634959023372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |