Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1666 199 6e-45 seq2393 178 2e-38 seq5249 120 5e-21 seq4947 113 7e-19 seq4078 100 5e-15 >seq1666 Length=59928 Score = 199 bits (220), Expect = 6e-45 Identities = 237/317 (75%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| |||||||| ||| || || |||||| |||||| |||||||||||||| | || Sbjct 55189 TGACACCCGCCTTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGA 55248 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 |||| || |||||| | ||| ||||||| | ||||||||||| | || | Sbjct 55249 GCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAA 55308 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 ||| | | ||||||||||| || || || ||||||||||||||||||||| | ||||||| Sbjct 55309 GCGCCACCAGCAGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCA 55368 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || ||||| || | || | | ||||||| ||| ||||||||||||| Sbjct 55369 TGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCT 55428 Query 794131 CGATGATGATCTGCCTGGGCA-CGTCGGACGACGGCTTGTCGAC--GAGCATCGTGTAGA 794187 ||| ||||||| || || | |||| | ||||| ||||| || | | ||| Sbjct 55429 CGACAATGATCT-TCTCAACAGCCTCGGGGGTCGGCT--TCGACTTGATGTGAGAGAAGA 55485 Query 794188 GCAGGCAGGCAAAGTCG 794204 ||||||||||||||||| Sbjct 55486 GCAGGCAGGCAAAGTCG 55502 >seq2393 Length=18100 Score = 178 bits (196), Expect = 2e-38 Identities = 351/507 (69%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 2411475 GTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCC 2411534 ||| |||||| |||||| || || | ||| ||||| || | |||||| || Sbjct 5119 GTATCCCAGCTTCGGCAGCGCCTCCTTGGCCAGGGCGAAGATTTTCCTCTGGTCCACACC 5060 Query 2411535 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAC 2411594 ||||| || |||| |||||||||| ||||||||| ||||||||||| |||||||||| Sbjct 5059 ACCAAATTGTACGTCAACGTCGAGGTACTGCTCGTCCAGGGCCTGCATCAGCGGGTAGAT 5000 Query 2411595 GAGGTTGCTGAGCGGCGGGTTG-CGGTCCATCTTGACCACCTGGGCGGCGGCC--TTTTG 2411651 |||| | ||| | |||||| | || | |||||| |||| ||| | ||| |||| Sbjct 4999 GAGGCCGGACAGCAGGGGGTTGTCCGT-CTGCTTGACAACCTCGGCACCTGCCCTCTTTG 4941 Query 2411652 CGCCGTGC-CGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAG-GCGGCG 2411709 || ||||| || ||||| | | || |||| |||| ||||| | | ||||| || || Sbjct 4940 CGTCGTGCTCGGTGGTCATG-GTGC--TCAGCCGCAGCAGGTCCATCATGTAGTCCGACG 4884 Query 2411710 CCATGCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGC 2411769 | | ||||| |||||||| ||||||| || || || || | || ||||| | | | Sbjct 4883 AC-TTTTGGTACTCGCTGCCCAGCACAAACTCCAGCCGGTCGACCGACACGCCCACGGCC 4825 Query 2411770 TGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCAC 2411829 | | | || | || |||||| ||| | | ||||| | |||||| || Sbjct 4824 TTCAAGCTCTCCGTTATCACAAACTTGTAGTACTTGGCGCGGTGGTTGACGAGCTCAATT 4765 Query 2411830 GGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACAT 2411889 |||| |||| |||||||| ||||| | |||||| | || ||| | || |||| Sbjct 4764 GGCGCCTTGAGGTTGTCGAGAAAAGCGTGGATGTCGGCCAGCAGAATCTTGACGTGACAG 4705 Query 2411890 CCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTT 2411948 || ||||| || || | ||| | || | || |||||||||||||| ||| |||| | Sbjct 4704 CCCGCCTGCAGGAACTGGGCAATCTTCAGCATTGGCACAAAGTAGCCGCAGTGCGGGCGT 4645 Query 2411949 GCCCGTCGGCGCGGTGCCCCAATAAAT 2411975 ||||||| || |||||||| || || Sbjct 4644 -CCCGTCGTTGCCGTGCCCCAGTAGAT 4619 >seq5249 Length=10599 Score = 120 bits (132), Expect = 5e-21 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| |||| ||||||||||| | ||||||||||| Sbjct 7602 CTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGA 7543 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||| || || | ||||| ||| | | || | ||| || | || Sbjct 7542 GGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACC 7483 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||||| |||||| || | || || | || || || |||||||||||||| Sbjct 7482 GATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTC 7423 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGA 2073755 ||| ||| |||||||||| | || ||||| || Sbjct 7422 GATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGA 7387 Score = 114 bits (126), Expect = 2e-19 Identities = 271/410 (66%), Gaps = 14/410 (3%) Strand=Plus/Minus Query 2071610 TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGG 2071669 |||| |||||||||| |||||||| | ||||| |||||||||| |||||| ||| Sbjct 8005 TGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGG 7946 Query 2071670 GCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCAC 2071727 | || |||||| |||| ||| | ||||| |||| | || | |||||| | Sbjct 7945 GGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGCTTCTGGGCGCGGATA- 7887 Query 2071728 CGAGGTC-CTCG--CGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGC 2071784 ||| | || | ||||| | | || | ||||| || | Sbjct 7886 ----GTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTC 7831 Query 2071785 GCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCC 2071844 ||||| | ||| || || || |||||| ||||| | ||| | ||| |||||| Sbjct 7830 GCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTT 7771 Query 2071845 AGTCACCACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGC 2071902 | | || || ||| ||||| || | || ||||||| |||| || | ||||| Sbjct 7770 TTGCTCGACACGCTTCATGAACAGATCAGGAAC--CCACAGGGCGTAGAACAAGTCGCGT 7713 Query 2071903 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCG 2071962 || ||| ||| ||||| ||||||||||| |||||||| || || || ||||||| Sbjct 7712 GCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCG 7653 Query 2071963 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| |||||||||||| |||||| || || ||||||| ||| || Sbjct 7652 TGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACC 7603 >seq4947 Length=12178 Score = 113 bits (124), Expect = 7e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||||| ||||||||| | || || || | || |||||||| || |||||| Sbjct 11191 GCTGCCAACTACCTGGACATCAAGGCGCTGCTGGACGTCGGTTGCAAGACTGTCGCCAAC 11250 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||||||||||||||| || || |||||||||||||| ||||| || ||| Sbjct 11251 ATGATCAAGGGCAAGTCGCCTGATGAGATCCGCAAGACCTTCAACATTCAGAACG 11305 >seq4078 Length=18759 Score = 100 bits (110), Expect = 5e-15 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 431031 CGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCG-AGATGTTTCTGCA 431089 || |||||||| | ||||| ||| |||||| || | ||| | || || | ||| | || Sbjct 8727 CGTGGCTTTGTCCAAAACTCTTACCTGCGCGGACTGA-CTCCCACGGAGTTCTTTTTCCA 8785 Query 431090 CATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTA 431149 | || | || || |||||||| | || || || |||||||| || ||||||||||| Sbjct 8786 CGCCATGGCTGGTCGTGAGGGTCTGATTGATACTGCTGTCAAGACCGCTGAGACGGGCTA 8845 Query 431150 CATCCAGCGTCGGTGCATCAAATCGATGGAGAGCCTGCA-GATCAAGCGCGGCGGCCTCG 431208 ||| ||||| || | |||| | |||| || | || || |||| || |||| || Sbjct 8846 CATTCAGCGCCGTTTGGTCAAGGCACTGGA-AGACGTCATGACCAAGTACGACGGCACCG 8904 Query 431209 TGCGCAACGCCAACGGCGACATTGTCCAGTTTGCCTATGGCGGCGACG 431256 |||||||| || ||||||||||| || || | ||| || | |||| Sbjct 8905 TGCGCAACTCCCTTGGCGACATTGTACAATTCGTCTACGGAGAGGACG 8952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915634959023372