Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 275 6e-69
seq1666 168 6e-37
seq3589 129 6e-25
seq2177 113 4e-20
seq2758 98.7 1e-15
>seq5249
Length=10599
Score = 275 bits (304), Expect = 6e-69
Identities = 1004/1545 (65%), Gaps = 50/1545 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
|| || || || ||||| || |||||||| || ||| || | |||| || | ||
Sbjct 8653 TTGACAACTTGGAACTCACCAGCGAGCACACGACGCGAGTAAATGTTGGAGGTGTAGGGC 8594
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| |||||||| ||| | || || |||| || || |||||| || ||
Sbjct 8593 TCAAAACACTCGTTGAAGCCAAGGATTTGGCTAGTCGAGGCAGTAGGCATGGGAGCAACA 8534
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439
|||| |||||||| ||| | || | || ||| |||||| |||||||||||
Sbjct 8533 AGCAAGCTGTTGCGCACGCCGTGTAGAGCAATCTCGCCCTTGAGAGCCTCCCAGTCCCAG 8474
Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499
|| | || ||| ||||||||||||||| |||| ||||| | || ||
Sbjct 8473 AGGTCTGTGGGCGTCTTGTTCCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAA 8414
Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC--TCGAGCG 148557
|| |||||||| ||| | ||| | | | ||||| || | | | | || || |
Sbjct 8413 CCTTCGTACGACGAGTAAGCTCCATCCTTCTTAGCCAGCTCA-ATCGAGGCAGTC-AGGG 8356
Query 148558 CGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT---T 148614
| |||| ||| || |||||| ||| || |||| ||| || ||| ||| |
Sbjct 8355 CACCGT-GTAGATGGTCTCGAAAATCTGAATGTTAAGCTGCCTGGCC---TCGGGAGAGT 8300
Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674
|| | | ||| || || | || || ||||||||||| | || || || |||| |
Sbjct 8299 CGAAAGCCATGCGGAGGGCGAGGAAAGCATCGGCAAGGCCGTTGACACCGACAGCAATCG 8240
Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGA-TAGTGGTTGCGGTCGATG 148733
| ||||| |||||| | || ||| || ||| ||||| ||| |||||||
Sbjct 8239 GGCGGTGGCGCATGTTGCTCTTCCTGGC-CTCGGGAACGGGGTAGTGATTGATGTCGATG 8181
Query 148734 ATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA- 148792
||||||| || || || | |||| || | | ||||| | || | |||
Sbjct 8180 ATCTTGTTCAGGTTCTTGACAAGGACCTGGGTGACCTCGTGCAGCTTCTTGAAGTTGTAG 8121
Query 148793 --------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACG 148844
|| | |||| || | | | || | ||| | ||||| | ||||| ||
Sbjct 8120 ACACCATTCTCGACATCGACAAAGG-TGGGA--AGGGCCAGGGAGGCCAAGTTGCAGACA 8064
Query 148845 GCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTG---CTGCATTTG 148901
|| ||| || ||||| ||||||| || ||||| |||||| ||| |||| ||
Sbjct 8063 GCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAATG 8004
Query 148902 ATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTAC 148961
| |||| ||||||||| |||||||||| |||||| ||||||||||| |||||| |
Sbjct 8003 GTA---CCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAG 7947
Query 148962 GGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---ACCGATGCAGGTCCTGCGCGCGC 149018
|| ||| || || ||| | |||| ||| ||| ||| | ||| |||||
Sbjct 7946 GGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGGCGTACCA---CAGCTTCTGGGCGCGG 7890
Query 149019 ACTTGCTGCTCGTAG-CGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTC 149077
| || | || || || ||| |||||| ||||||| ||| ||| | ||
Sbjct 7889 ATAGTCT-CACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTC 7831
Query 149078 GCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTC 149137
||||||| |||| ||||||| ||| || ||| ||||||||||| | ||| ||||||
Sbjct 7830 GCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTT 7771
Query 149138 CGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 149197
| || |||||||| |||||||| || ||||| || ||||| | | |||||| ||
Sbjct 7770 TTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGC 7711
Query 149198 CTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTG 149257
| ||||| || ||| ||| |||| ||| | | ||| | ||| |||||
Sbjct 7710 GCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTG 7651
Query 149258 CCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTG 149314
||| ||||| | ||| | || | || || |||| ||||| |||||||| ||||
Sbjct 7650 CCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGCCACCCTGGTCAACGTA 7591
Query 149315 GCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT 149374
||| | ||||||| | || || | ||| || | ||| ||| |||||||| ||
Sbjct 7590 GCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGTTGGT 7531
Query 149375 A-GAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-G 149432
| ||| |||| ||| | || | ||| ||||||| ||||| || || |
Sbjct 7530 ACCAGC-AATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGAGACCGATTCCACCGG 7472
Query 149433 CCGTACTTTGAGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTC 149491
|||| ||| || || || | |||| ||| || |||||||||||||||||||||
Sbjct 7471 CCGT-CTTGGAAATCATGGCACAAGTC-TTGAGGGTGTCGTAGATGCCCTCGATGCTGTC 7414
Query 149492 GCGCTTCATGGTCAGCAGAAAGCACGA-GCACATTTGCGGAAAACGCGTGCCGGCCGCGA 149550
||||||| | || ||||| || ||| | || || | || || || ||
Sbjct 7413 CTCCTTCATGTCGATCAAGAAGCATGATGCA-AGCTGGGGCTTGGGGGTACCAGCGTTGA 7355
Query 149551 ACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCA 149610
||| |||||| ||||| ||||| || || || ||||| | ||||| || |
Sbjct 7354 ACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTGTACGTTTCAATGG 7295
Query 149611 CGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTC 149670
| || |||| ||||| ||||| || | ||||| ||||| | ||| ||||| ||||
Sbjct 7294 CCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATCATGTGCTGTGGTC 7235
Query 149671 GCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAA 149730
|| || || ||| | || ||||||||| | || || |||||| ||||||
Sbjct 7234 TTTCGGCAACCTTGCCATCGATGCGGAGCAAGTATGACCTCTCGAGCGTCTTGAAGCCAA 7175
Query 149731 AGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTCGA 149775
|||| | ||||| ||||||||| ||| | | ||||| | || ||
Sbjct 7174 AGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCGAGTTGA 7130
>seq1666
Length=59928
Score = 168 bits (186), Expect = 6e-37
Identities = 341/502 (68%), Gaps = 13/502 (3%)
Strand=Plus/Plus
Query 120355 TACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATA 120414
|| || || ||||| ||||| || ||||| || ||||| | | ||||||||| | |||
Sbjct 55206 TAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTTGAGCGAAATGTTCTCCATG 55265
Query 120415 AACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGG 120474
|| ||||| |||||| | | ||| ||| ||| | ||| | | || ||||| |||
Sbjct 55266 AAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCCAAGCGCCACCAGCAGGCGG 55325
Query 120475 TCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACC 120534
|| || |||||||||||||||| ||||||| ||||||||||| |||| || ||
Sbjct 55326 TCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTTCATGCCGAGCAGAGCAACG 55385
Query 120535 GGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCT---CCTTGAACATGGC- 120590
|| | || || | ||||| | |||||| || || |||| | ||| | | |
Sbjct 55386 GGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGCCTCGACAATGATCTTCTCA 55445
Query 120591 -GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAA 120649
||| | | | || ||| ||| | |||| | | | || |||||| ||||
Sbjct 55446 ACAGCCTCG-GGGGTCGG----CTTCGACTTGATGTGAG---AGAAGAGCAGGCAGGCAA 55497
Query 120650 AGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCA 120709
|||| ||||||| |||||||||||| || || ||||||||| || ||||| || ||||
Sbjct 55498 AGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAATGTCAGACCAGGCA 55557
Query 120710 TGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCT 120769
| | || | |||||| |||| |||| || ||| ||| ||||| | ||||
Sbjct 55558 TCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGAGCCGCTGAAGAAGATACCCT 55617
Query 120770 CCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACT 120829
| ||| |||||||||| | ||| || || |||| ||||| | ||||||
Sbjct 55618 CGACGGCAGCAAAGGCGATGAGACGCGATGCAAAGGTCGAGTTCTTGTCGCAGATCCAGC 55677
Query 120830 TCATGGCCCACTCGGCCTTTTT 120851
|| ||||| |||||||| ||
Sbjct 55678 GCAGAGCCCAGTCGGCCTTCTT 55699
>seq3589
Length=6346
Score = 129 bits (142), Expect = 6e-25
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
|| || | ||| ||||| || || || ||||| || ||| ||| ||||||||||
Sbjct 3233 AAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCCTCGAGC 3292
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| || |||| || |||||||| ||||| ||||| || |||||||| ||||
Sbjct 3293 TGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCTTGGATC 3352
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | |||| |||||| | | ||| || || | || | ||| ||||||
Sbjct 3353 TTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTCTTGCCG 3412
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| ||| || ||||| ||||||||
Sbjct 3413 GTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 125 bits (138), Expect = 7e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||||
Sbjct 3014 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCA-TCCTCAAGCTGCTTGCC 3072
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| |||| || ||||||||||| || || ||||| |||||||| ||||| |||
Sbjct 3073 CGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTT 3132
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||| || | | |||||| || | || | || |||||||||| ||
Sbjct 3133 GACGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGTAATCGTCTTGCCGGTCAAGGT 3192
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 3193 CTTGACGAAGATCTGCAT 3210
Score = 105 bits (116), Expect = 6e-18
Identities = 130/174 (75%), Gaps = 3/174 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | | ||| | | | ||||| |||||||||||
Sbjct 3749 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 3807
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | ||||| ||||||| ||| || |||||||| |||||||| |||||| |||
Sbjct 3808 AGCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 3866
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
|| | || | ||||||| || ||| || || | ||||| ||| ||||| ||
Sbjct 3867 GACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 3920
Score = 98.7 bits (108), Expect = 1e-15
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
|| || | |||||| || ||||| || ||||| ||| | | ||| ||| |||||||||
Sbjct 3461 AAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACC-GTCCTCGAG 3519
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
|||||||| ||| | || | ||||||||||| || |||||||| ||||| || ||
Sbjct 3520 TTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAAT 3579
Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| ||||| | || | ||||||| | || || |||| ||||| ||| |||||
Sbjct 3580 CTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATGGTCTTGCC 3639
Query 133634 GGT 133636
||
Sbjct 3640 AGT 3642
>seq2177
Length=34801
Score = 113 bits (124), Expect = 4e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||||||||||||||| ||| | || || ||||||||||| || || ||||| |||||
Sbjct 6170 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 6111
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||| | || ||| || |||| |||||
Sbjct 6110 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTGAT 6051
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651
||| ||||| ||||| || || |||||
Sbjct 6050 GGTCTTGCCCGTCAGGGTCTTGACGAA 6024
>seq2758
Length=2532
Score = 98.7 bits (108), Expect = 1e-15
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| ||| || |||| ||||||||||||||||||
Sbjct 1659 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 1600
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGT 133570
||| | || || |||||||||||||| |||||||| |||||||| ||
Sbjct 1599 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTGT 1553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483386066215520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |