Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5249 188 7e-43 seq1666 102 8e-17 >seq5249 Length=10599 Score = 188 bits (208), Expect = 7e-43 Identities = 619/952 (65%), Gaps = 15/952 (2%) Strand=Plus/Minus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || |||| |||||||| || ||| |||| | | |||||| || || || |||| Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 |||||| || ||| |||| || | || ||||| || || ||||| ||||| Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAG 147644 ||| |||||||| | || |||||||||| || | || | || | || ||| Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGG-CGTACCACAG 7903 Query 147645 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCG 147704 | ||| || || | || ||| ||||| || | ||||||| ||| |||| | Sbjct 7902 CTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843 Query 147705 CTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGA 147764 ||||||||||||||||||| |||||| || || || || || || ||||| || | Sbjct 7842 CTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGT 7783 Query 147765 CCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACAT 147824 ||| | ||| | || || ||| |||||||| || |||||||| ||||| | Sbjct 7782 CCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAA 7723 Query 147825 AAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTCAAA--TTAAGCACGC 147880 | ||||| || || |||| | || || | | || | | | || | | Sbjct 7722 CAAGTCGCGTGC---GCGGACCTCTTCCTTTCCGTGGTTC-TTGCGGAGGTCGAGGAAGG 7667 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---C 147937 ||| |||||||||||| || || | ||||| ||| | ||||| ||||| | Sbjct 7666 GGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGC 7607 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 | |||||||| || | ||| | ||||||| | || || | |||||| ||||||| Sbjct 7606 CACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGT 7547 Query 147998 TCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAA 148057 | | ||||||||||| | || | | ||| | || | ||| ||||| | Sbjct 7546 TGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGA 7487 Query 148058 CGCCAATGCCGCCG-CCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116 || || || ||| |||| ||| || || || ||| | || ||||||| Sbjct 7486 GACCGATTCCACCGGCCGT-CTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATG 7428 Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 || ||||||||||| | || | | | | ||| || || || | || || | | Sbjct 7427 CCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGG 7368 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 || || || ||| | ||||||| ||||| ||||| | |||||| ||||| | Sbjct 7367 GTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTG 7308 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 ||||| ||||| || | ||| |||| |||||||| || || | ||||| ||||| | | Sbjct 7307 TACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATC 7248 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 ||||||||||||| ||||||||| | | ||| ||| | ||| | ||||| Sbjct 7247 ATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTATGACCTCTCGAGC 7188 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | |||||||| | ||| | || || | ||||| ||||||||| Sbjct 7187 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCG 7136 >seq1666 Length=59928 Score = 102 bits (112), Expect = 8e-17 Identities = 245/361 (68%), Gaps = 11/361 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||| ||| |||||| | ||||| |||||||| || | ||||| ||| Sbjct 55558 ATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCGAC 55499 Query 46974 TTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCT 47032 ||||| || || || || | | | | || ||| | | | || | | Sbjct 55498 TTTGCCTGCCTGCTCTTCT----CTCACATCAAGTCGAAGCCGACCCCCGAGGCTGTTGA 55443 Query 47033 GAGCATGTTTAGGGAGGCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCG 47091 || || || ||||| || ||| || || | ||||| | |||| || || |||| Sbjct 55442 GAAGATCATTGTCGAGGCCGTCGAG-ATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCG 55384 Query 47092 TCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGAT 47150 | || |||| ||||||||||| | || |||||| | || ||||||||||| || || Sbjct 55383 TTGCTCTGCTCGGCATGAACGCTG-GCCTCATGTGCCAGTACATTGAGTTTGTTGCTGAC 55325 Query 47151 CGTCTGTTGGTGCAGCTCGGACAACC-GAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| ||||| ||| || |||| ||| | | || || || || || || || Sbjct 55324 CGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTT 55266 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||| | |||||||||||| | ||||| ||||| || |||||||| || || || || || Sbjct 55265 CATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 55206 Query 47270 T 47270 | Sbjct 55205 T 55205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476576955485280