Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 188 7e-43
seq1666 102 8e-17
>seq5249
Length=10599
Score = 188 bits (208), Expect = 7e-43
Identities = 619/952 (65%), Gaps = 15/952 (2%)
Strand=Plus/Minus
Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525
|| |||| |||||||| || ||| |||| | | |||||| || || || ||||
Sbjct 8081 GAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCGACAATCTCACAGCAC 8022
Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585
|||||| || ||| |||| || | || ||||| || || ||||| |||||
Sbjct 8021 AGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCC 7962
Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAG 147644
||| |||||||| | || |||||||||| || | || | || | || |||
Sbjct 7961 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAAATGG-CGTACCACAG 7903
Query 147645 GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCG 147704
| ||| || || | || ||| ||||| || | ||||||| ||| |||| |
Sbjct 7902 CTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTC 7843
Query 147705 CTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGA 147764
||||||||||||||||||| |||||| || || || || || || ||||| || |
Sbjct 7842 CTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGT 7783
Query 147765 CCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACAT 147824
||| | ||| | || || ||| |||||||| || |||||||| ||||| |
Sbjct 7782 CCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAACCCACAGGGCGTAGAA 7723
Query 147825 AAGATCGCGCGCTTTGCAATCCTCGGCGC--CCATGTTGCGTTTCAAA--TTAAGCACGC 147880
| ||||| || || |||| | || || | | || | | | || | |
Sbjct 7722 CAAGTCGCGTGC---GCGGACCTCTTCCTTTCCGTGGTTC-TTGCGGAGGTCGAGGAAGG 7667
Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---C 147937
||| |||||||||||| || || | ||||| ||| | ||||| ||||| |
Sbjct 7666 GGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGGGCGCTTGTTGC 7607
Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997
| |||||||| || | ||| | ||||||| | || || | |||||| |||||||
Sbjct 7606 CACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGAATCAGGCCGT 7547
Query 147998 TCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAA 148057
| | ||||||||||| | || | | ||| | || | ||| ||||| |
Sbjct 7546 TGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCGGTGGACGTTGA 7487
Query 148058 CGCCAATGCCGCCG-CCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATG 148116
|| || || ||| |||| ||| || || || ||| | || |||||||
Sbjct 7486 GACCGATTCCACCGGCCGT-CTTGGAAATCATGGCACAAGTCTTGAGGGTGTCGTAGATG 7428
Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176
|| ||||||||||| | || | | | | ||| || || || | || || | |
Sbjct 7427 CCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGCTGGGGCTTGGGG 7368
Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236
|| || || ||| | ||||||| ||||| ||||| | |||||| ||||| |
Sbjct 7367 GTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTGAGACATCAAGTTG 7308
Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296
||||| ||||| || | ||| |||| |||||||| || || | ||||| ||||| | |
Sbjct 7307 TACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGCGACACGCATAATC 7248
Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356
||||||||||||| ||||||||| | | ||| ||| | ||| | |||||
Sbjct 7247 ATGTGCTGTGGTCTTTCGGCAACCTTGCCATCGATGCGGAGCAAGTATGACCTCTCGAGC 7188
Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||| | |||||||| | ||| | || || | ||||| |||||||||
Sbjct 7187 GTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACGATGGCCG 7136
>seq1666
Length=59928
Score = 102 bits (112), Expect = 8e-17
Identities = 245/361 (68%), Gaps = 11/361 (3%)
Strand=Plus/Minus
Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973
||||| || ||||| ||| |||||| | ||||| |||||||| || | ||||| |||
Sbjct 55558 ATGCCTGGTCTGACATTCTCCAACGAGCTCATCTCTCGCGACGAGGGCATGCACACCGAC 55499
Query 46974 TTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCT 47032
||||| || || || || | | | | || ||| | | | || | |
Sbjct 55498 TTTGCCTGCCTGCTCTTCT----CTCACATCAAGTCGAAGCCGACCCCCGAGGCTGTTGA 55443
Query 47033 GAGCATGTTTAGGGAGGCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCG 47091
|| || || ||||| || ||| || || | ||||| | |||| || || ||||
Sbjct 55442 GAAGATCATTGTCGAGGCCGTCGAG-ATTGAGCAAGAGTTCCTGACTGACGCTCTCCCCG 55384
Query 47092 TCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGAT 47150
| || |||| ||||||||||| | || |||||| | || ||||||||||| || ||
Sbjct 55383 TTGCTCTGCTCGGCATGAACGCTG-GCCTCATGTGCCAGTACATTGAGTTTGTTGCTGAC 55325
Query 47151 CGTCTGTTGGTGCAGCTCGGACAACC-GAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209
|| ||| ||||| ||| || |||| ||| | | || || || || || || ||
Sbjct 55324 CGCCTGCTGGTGGCGCTTGG-CAACAAGAAGCACTACAACTCTACCAACCCCTTCGACTT 55266
Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269
||| | |||||||||||| | ||||| ||||| || |||||||| || || || || ||
Sbjct 55265 CATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGACTA 55206
Query 47270 T 47270
|
Sbjct 55205 T 55205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476576955485280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |