Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 167 3e-35
seq5249 120 4e-21
seq4078 100 4e-15
>seq1666
Length=59928
Score = 167 bits (184), Expect = 3e-35
Identities = 237/327 (72%), Gaps = 10/327 (3%)
Strand=Plus/Minus
Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAAC---AAGCCGTCGACCG 1456508
||||| ||||||||||| ||||||| | | | | |||| |||||| | |||
Sbjct 55509 TGCACACCGACTTTGCCTGCCTGCTCTTCTCT---CACATCAAGTCGAAGCCGACCCCCG 55453
Query 1456509 ACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568
| | || ||||||| ||||||||||||||||| ||| ||||||| | | ||
Sbjct 55452 AGGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACG 55393
Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628
| || || || || || ||||||||||||| | ||||||||||||||||||| | ||
Sbjct 55392 CTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGC-CTCATGTGCCAGTACATTG-AGTT 55335
Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688
||| || ||||||||||| | |||||| ||| | ||||||||||| | ||||||
Sbjct 55334 TGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAAC-AAGAAGCACTACAACTCTACCAACC 55276
Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748
| ||| | |||||| || |||||| | |||||||||||||| |||||| ||||
Sbjct 55275 CCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCG 55216
Query 1456749 -TGGCGAGTACGCCAAGGCCGGCGTCA 1456774
||| || || ||||| || ||||
Sbjct 55215 TTGGTGACTATCAAAAGGCGGGTGTCA 55189
Score = 152 bits (168), Expect = 7e-31
Identities = 243/343 (71%), Gaps = 23/343 (7%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || |||||||||||||| || ||||||||||||||| | || |
Sbjct 56097 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATC 56039
Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATT 1455885
| | || |||| ||||| | ||| ||| ||||||||||||| |
Sbjct 56038 TGTCCAAGGATCTCCACG----ACTGGAACAAGCGTC--TGAACGACGACGAGCGCTTCT 55985
Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945
||||| ||||| |||||||| ||| ||||| |||||||| || ||||||| ||
Sbjct 55984 TCATCTCCCACGTTCTCGCCTTCTTT-GCCGCGTCTGATGGCATTGTCAACGAGAACTTG 55926
Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005
| || ||||| | || || || | || ||||| || | || ||||| ||||||
Sbjct 55925 GTCGAGCGCTTCAGCTCCGAAGTGCAGATTCCCGAGGCTCGCTGCTTCTACGGTTTCCAG 55866
Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065
|| || || ||||||||||| || || ||||||||| |||||||||| ||| |||
Sbjct 55865 ATTATGATGGAGAACATCCACTCGGAGACATACTCGCTCTTGATCGACACGTACATCAGC 55806
Query 1456066 GACCCGGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACA 1456105
|| || | || || || ||||||| |||||| ||||
Sbjct 55805 GAGCC---CAAGCAGCGCAACTACCTCTTCAACGCCATTGACA 55766
Score = 95.1 bits (104), Expect = 2e-13
Identities = 120/159 (75%), Gaps = 11/159 (7%)
Strand=Plus/Minus
Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCC 1456178
||| |||||||||||||| || |||||| ||||| | |||||| ||||||
Sbjct 55700 GAAGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTTGCA 55646
Query 1456179 GAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-C 1456236
||| ||| ||| |||||| || |||||||| ||||| ||| ||| ||| ||| |
Sbjct 55645 TCGCGTCTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC-GCGTC 55587
Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| |||||||||||||| || || ||||| |||||
Sbjct 55586 CATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCT 55548
>seq5249
Length=10599
Score = 120 bits (132), Expect = 4e-21
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026
|| ||||| || | |||||||||| || |||||||||||||| ||||| ||||||
Sbjct 7387 TCATGCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACCCTCAAG 7446
Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086
|| || | || |||||| ||||||| || |||||| | || ||| | ||
Sbjct 7447 ACTTGTGCCATGATTTCCAAGACGGCCGGTGGAATCGGTCTCAACGTCCACCGCATCCGT 7506
Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146
| | ||| ||||| | || || ||||||||| ||||||||||| | ||||||||
Sbjct 7507 TCAACTGGCTCCTACATTGCTGGTACCAACGGCACCTCCAACGGCCTGATTCCCATGCTC 7566
Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| || | ||| |||| || |||||||| ||||||
Sbjct 7567 CGTGTCTACAACAACACCGCTCGCTACGTTGACCAG 7602
Score = 118 bits (130), Expect = 2e-20
Identities = 337/514 (66%), Gaps = 20/514 (4%)
Strand=Plus/Plus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| || || |||||| ||||||||| || |||||||||||| ||
Sbjct 7603 GGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGGCACGCCGACGTC 7662
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| || || |||||| ||||||||||| |||| || || ||| ||| |||
Sbjct 7663 TTCCCCTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGT----CCG--CGCACGC 7716
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGC--GACCTGTTTATGCGCCGCATGGTGACCGGCC 261965
|| | || |||| ||||||| || | || ||||| ||| || | | | |
Sbjct 7717 GACTTGTTCTACGCCCTGTGG--GTTCCTGATCTGTTCATGAAGCGTGTCGAGCAAAACG 7774
Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025
|||| ||| | ||| | ||||| |||||| || || || ||| ||| |||| |
Sbjct 7775 GCGATTGGACTCTCATGTGCCCTCACGAGGCCCCGGGTCTCGCCGATGTCTACGGCGACG 7834
Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGC 262082
||||| | || |||||| || ||| || ||
Sbjct 7835 AGTTTGAGGAGCTGTATGAGAGGTACGAGAGGGAAGGCCGTGGTCGTGAGACTATCC-GC 7893
Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142
| || || || | |||| |||||| | | ||| || | ||||||||||| |||| ||
Sbjct 7894 GCCCA-GA-AGCTGTGGTACGCCATTTTGGAGGCTCAGACCGAGACCGGCAACCCCTTCA 7951
Query 262143 TGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGAC 262200
|| ||||||||||||| ||||| | |||||||| |||||||||| |||| || |
Sbjct 7952 TGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAAAAGAACCTGGGTACCATTCG-C 8010
Query 262201 AGAGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTG 262260
|| ||||||||||| ||||| ||| ||| | | ||| ||||| ||| ||
Sbjct 8011 AG-CTCCAACCTGTGCTGTGAGATTGTCGAGTACACTGCCCCCGACGAGGTTGCTGTCTG 8069
Query 262261 CAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294
|||| | | | ||||||| |||| ||||||
Sbjct 8070 CAACTTGGCCTCCCTGGCCCTTCCCACCTTTGTC 8103
>seq4078
Length=18759
Score = 100 bits (110), Expect = 4e-15
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 1816049 CCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCG 1816108
||||| | || || | || || ||||||||||| || |||||||||| |||| ||
Sbjct 8953 CCGTCCTCTCCGTAGACGAATTGTACAATGTCGCCAAGGGAGTTGCGCACGGTGCCGTCG 8894
Query 1816109 CGCTTGATC-TGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC- 1816166
|||| || || | || |||| | ||||| | |||||||| |||||||| ||||
Sbjct 8893 TACTTGGTCATGACGTCT-TCCAGTGCCTTGACCAAACGGCGCTGAATGTAGCC-CGTCT 8836
Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226
| ||||||||||| || || || | ||| ||||| || || | || ||| ||||| |
Sbjct 8835 CAGCGGTCTTGACAGCAGTATCAATCAGACCCTCACGACCAGCCATGGCGTGGAAAAAGA 8776
Query 1816227 TCT-CGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCG 1816275
|| || | ||| | || |||||| ||| ||||| | |||||||| ||
Sbjct 8775 ACTCCGTGGGAG-TCAGTCCGCGCAGGTAAGAGTTTTGGACAAAGCCACG 8727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177256794835176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |