Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1666 167 3e-35 seq5249 120 4e-21 seq4078 100 4e-15 >seq1666 Length=59928 Score = 167 bits (184), Expect = 3e-35 Identities = 237/327 (72%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAAC---AAGCCGTCGACCG 1456508 ||||| ||||||||||| ||||||| | | | | |||| |||||| | ||| Sbjct 55509 TGCACACCGACTTTGCCTGCCTGCTCTTCTCT---CACATCAAGTCGAAGCCGACCCCCG 55453 Query 1456509 ACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 | | || ||||||| ||||||||||||||||| ||| ||||||| | | || Sbjct 55452 AGGCTGTTGAGAAGATCATTGTCGAGGCCGTCGAGATTGAGCAAGAGTTCCTGACTGACG 55393 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 | || || || || || ||||||||||||| | ||||||||||||||||||| | || Sbjct 55392 CTCTCCCCGTTGCTCTGCTCGGCATGAACGCTGGC-CTCATGTGCCAGTACATTG-AGTT 55335 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACC 1456688 ||| || ||||||||||| | |||||| ||| | ||||||||||| | |||||| Sbjct 55334 TGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAAC-AAGAAGCACTACAACTCTACCAACC 55276 Query 1456689 CGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG 1456748 | ||| | |||||| || |||||| | |||||||||||||| |||||| |||| Sbjct 55275 CCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGCGCG 55216 Query 1456749 -TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||| || || ||||| || |||| Sbjct 55215 TTGGTGACTATCAAAAGGCGGGTGTCA 55189 Score = 152 bits (168), Expect = 7e-31 Identities = 243/343 (71%), Gaps = 23/343 (7%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||||||||||||| | || | Sbjct 56097 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCGTTCTGGACCGCCGAGGAGATTGATC 56039 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATT 1455885 | | || |||| ||||| | ||| ||| ||||||||||||| | Sbjct 56038 TGTCCAAGGATCTCCACG----ACTGGAACAAGCGTC--TGAACGACGACGAGCGCTTCT 55985 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 ||||| ||||| |||||||| ||| ||||| |||||||| || ||||||| || Sbjct 55984 TCATCTCCCACGTTCTCGCCTTCTTT-GCCGCGTCTGATGGCATTGTCAACGAGAACTTG 55926 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | || || || | || ||||| || | || ||||| |||||| Sbjct 55925 GTCGAGCGCTTCAGCTCCGAAGTGCAGATTCCCGAGGCTCGCTGCTTCTACGGTTTCCAG 55866 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 || || || ||||||||||| || || ||||||||| |||||||||| ||| ||| Sbjct 55865 ATTATGATGGAGAACATCCACTCGGAGACATACTCGCTCTTGATCGACACGTACATCAGC 55806 Query 1456066 GACCCGGTCGAGAAG---GACCACCTCTTTCGCGCCATCGACA 1456105 || || | || || || ||||||| |||||| |||| Sbjct 55805 GAGCC---CAAGCAGCGCAACTACCTCTTCAACGCCATTGACA 55766 Score = 95.1 bits (104), Expect = 2e-13 Identities = 120/159 (75%), Gaps = 11/159 (7%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCC 1456178 ||| |||||||||||||| || |||||| ||||| | |||||| |||||| Sbjct 55700 GAAGAAGGCCGACTGGGCTCTGCGCTGGATCTGCGACAAGAA----CTCGAC-CTTTGCA 55646 Query 1456179 GAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-C 1456236 ||| ||| ||| |||||| || |||||||| ||||| ||| ||| ||| ||| | Sbjct 55645 TCGCGTCTCATCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGCTCCTTC-GCGTC 55587 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| |||||||||||||| || || ||||| ||||| Sbjct 55586 CATCTTCTGGCTCAAGAAGCGTGGTCTGATGCCTGGTCT 55548 >seq5249 Length=10599 Score = 120 bits (132), Expect = 4e-21 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 259967 TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAG 260026 || ||||| || | |||||||||| || |||||||||||||| ||||| |||||| Sbjct 7387 TCATGCTTCTTGATCGACATGAAGGAGGACAGCATCGAGGGCATCTACGACACCCTCAAG 7446 Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 || || | || |||||| ||||||| || |||||| | || ||| | || Sbjct 7447 ACTTGTGCCATGATTTCCAAGACGGCCGGTGGAATCGGTCTCAACGTCCACCGCATCCGT 7506 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 | | ||| ||||| | || || ||||||||| ||||||||||| | |||||||| Sbjct 7507 TCAACTGGCTCCTACATTGCTGGTACCAACGGCACCTCCAACGGCCTGATTCCCATGCTC 7566 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || | ||| |||| || |||||||| |||||| Sbjct 7567 CGTGTCTACAACAACACCGCTCGCTACGTTGACCAG 7602 Score = 118 bits (130), Expect = 2e-20 Identities = 337/514 (66%), Gaps = 20/514 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || || |||||| ||||||||| || |||||||||||| || Sbjct 7603 GGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGGCACGCCGACGTC 7662 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || || |||||| ||||||||||| |||| || || ||| ||| ||| Sbjct 7663 TTCCCCTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGT----CCG--CGCACGC 7716 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGC--GACCTGTTTATGCGCCGCATGGTGACCGGCC 261965 || | || |||| ||||||| || | || ||||| ||| || | | | | Sbjct 7717 GACTTGTTCTACGCCCTGTGG--GTTCCTGATCTGTTCATGAAGCGTGTCGAGCAAAACG 7774 Query 261966 GCGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 |||| ||| | ||| | ||||| |||||| || || || ||| ||| |||| | Sbjct 7775 GCGATTGGACTCTCATGTGCCCTCACGAGGCCCCGGGTCTCGCCGATGTCTACGGCGACG 7834 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCG---GACCGTCGTGC 262082 ||||| | || |||||| || ||| || || Sbjct 7835 AGTTTGAGGAGCTGTATGAGAGGTACGAGAGGGAAGGCCGTGGTCGTGAGACTATCC-GC 7893 Query 262083 CCGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACA 262142 | || || || | |||| |||||| | | ||| || | ||||||||||| |||| || Sbjct 7894 GCCCA-GA-AGCTGTGGTACGCCATTTTGGAGGCTCAGACCGAGACCGGCAACCCCTTCA 7951 Query 262143 TGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGAC 262200 || ||||||||||||| ||||| | |||||||| |||||||||| |||| || | Sbjct 7952 TGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAAAAGAACCTGGGTACCATTCG-C 8010 Query 262201 AGAGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTG 262260 || ||||||||||| ||||| ||| ||| | | ||| ||||| ||| || Sbjct 8011 AG-CTCCAACCTGTGCTGTGAGATTGTCGAGTACACTGCCCCCGACGAGGTTGCTGTCTG 8069 Query 262261 CAACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||| | | | ||||||| |||| |||||| Sbjct 8070 CAACTTGGCCTCCCTGGCCCTTCCCACCTTTGTC 8103 >seq4078 Length=18759 Score = 100 bits (110), Expect = 4e-15 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1816049 CCGTCGCCGCCATATGCAAACTGGACAATGTCGCCGTTGGCGTTGCGCACGAGGCCGCCG 1816108 ||||| | || || | || || ||||||||||| || |||||||||| |||| || Sbjct 8953 CCGTCCTCTCCGTAGACGAATTGTACAATGTCGCCAAGGGAGTTGCGCACGGTGCCGTCG 8894 Query 1816109 CGCTTGATC-TGCAGGCTCTCCATCGACTTGATGCACCGGCGCTGGATGTAGCCACGTC- 1816166 |||| || || | || |||| | ||||| | |||||||| |||||||| |||| Sbjct 8893 TACTTGGTCATGACGTCT-TCCAGTGCCTTGACCAAACGGCGCTGAATGTAGCC-CGTCT 8836 Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 | ||||||||||| || || || | ||| ||||| || || | || ||| ||||| | Sbjct 8835 CAGCGGTCTTGACAGCAGTATCAATCAGACCCTCACGACCAGCCATGGCGTGGAAAAAGA 8776 Query 1816227 TCT-CGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCG 1816275 || || | ||| | || |||||| ||| ||||| | |||||||| || Sbjct 8775 ACTCCGTGGGAG-TCAGTCCGCGCAGGTAAGAGTTTTGGACAAAGCCACG 8727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177256794835176