Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 125 6e-24
seq2177 96.9 3e-15
>seq3589
Length=6346
Score = 125 bits (138), Expect = 6e-24
Identities = 156/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586
|||||| || | || |||||| || |||||||| |||||||| || || | || ||
Sbjct 3001 CACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCATCCTC 3060
Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646
|||||||| ||||| || |||| ||||||||||||| |||| || ||||||||||
Sbjct 3061 AAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 3120
Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705
||||| ||| | |||| | | ||| || || |||||||| | ||| ||||| |
Sbjct 3121 AATCTTGGACTTGA-CGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGTAATCGTCT 3179
Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
| || ||||| || || || || ||||||||
Sbjct 3180 TGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 89.7 bits (98), Expect = 5e-13
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| ||||||||||| ||||| | ||| || |||| || || ||||| || || ||
Sbjct 3476 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAG 3535
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| ||||||||||| | || | || |||||| ||| ||||| ||| | | |
Sbjct 3536 ATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTG 3595
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| | |||||| |||||| || || | ||||| || || || ||
Sbjct 3596 TCGATGGTGTCGGACGATTCGACTTCGAGGGTGATGGTCTTGCCAGT 3642
>seq2177
Length=34801
Score = 96.9 bits (106), Expect = 3e-15
Identities = 130/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 6204 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 6145
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| |||| || |||||||||| |||||| ||| | | |
Sbjct 6144 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 6085
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||| || || ||||| | ||||| || || ||||||| || || || |
Sbjct 6084 CGATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 6025
Query 35727 A 35727
|
Sbjct 6024 A 6024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450761210479840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |