Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1666 91.5 2e-13 >seq1666 Length=59928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 295/456 (65%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| || ||| ||||| || ||||||||||| |||||||| || || || ||||| | Sbjct 55187 CATGACACCCGCCTTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTT 55246 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 | || || || |||||||| || || || || || | || || | || || || Sbjct 55247 GAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCC 55306 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 | | | || | || |||||||| || ||||| ||| | || || Sbjct 55307 AAGCGCCACCAGCAGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTT 55366 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | || ||| || ||||| || || || ||||||| || || || ||||| Sbjct 55367 CATGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGC 55426 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCA--CTCGGTGGATGC-----AATAAATGTT 39605 ||| || ||| || |||| || ||||| || | | | |||| Sbjct 55427 CTCGACAATGATC----TT-----CTCAACAGCCTCGGGGGTCGGCTTCGACTTGATGTG 55477 Query 39606 TAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 | | | | |||||| ||||| || | |||||| || | | || | ||||| Sbjct 55478 AGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTT 55537 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 || ||||| || |||||||| ||||||||||| |||||||| || |||| || || || Sbjct 55538 GGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGA 55597 Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC 39759 || |||||||| || || || || ||||| || Sbjct 55598 GCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGC 55633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859445602720