Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1666 91.5 2e-13
>seq1666
Length=59928
Score = 91.5 bits (100), Expect = 2e-13
Identities = 295/456 (65%), Gaps = 18/456 (4%)
Strand=Plus/Plus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
||| || ||| ||||| || ||||||||||| |||||||| || || || ||||| |
Sbjct 55187 CATGACACCCGCCTTTTGATAGTCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCGTT 55246
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
| || || || |||||||| || || || || || | || || | || || ||
Sbjct 55247 GAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTAGAGTTGTAGTGCTTCTTGTTGCC 55306
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492
| | | || | || |||||||| || ||||| ||| | || ||
Sbjct 55307 AAGCGCCACCAGCAGGCGGTCAGCAACAAACTCAATGTACTGGCACATGAGGCCAGCGTT 55366
Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552
||| || | || ||| || ||||| || || || ||||||| || || || |||||
Sbjct 55367 CATGCCGAGCAGAGCAACGGGGAGAGCGTCAGTCAGGAACTCTTGCTCAATCTCGACGGC 55426
Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCA--CTCGGTGGATGC-----AATAAATGTT 39605
||| || ||| || |||| || ||||| || | | | ||||
Sbjct 55427 CTCGACAATGATC----TT-----CTCAACAGCCTCGGGGGTCGGCTTCGACTTGATGTG 55477
Query 39606 TAA--ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663
| | | | |||||| ||||| || | |||||| || | | || | |||||
Sbjct 55478 AGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCATGCCCTCGTCGCGAGAGATGAGCTCGTT 55537
Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723
|| ||||| || |||||||| ||||||||||| |||||||| || |||| || || ||
Sbjct 55538 GGAGAATGTCAGACCAGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGACGCGAAGGA 55597
Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGC 39759
|| |||||||| || || || || ||||| ||
Sbjct 55598 GCCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGC 55633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686859445602720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |