Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5249 158 2e-33 >seq5249 Length=10599 Score = 158 bits (174), Expect = 2e-33 Identities = 609/947 (64%), Gaps = 11/947 (1%) Strand=Plus/Minus Query 111210 TCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCAT 111269 |||| ||| |||| | | |||||||| | || ||||| ||||| ||||| ||| | Sbjct 8113 TCTCGACATCGACAAAGGTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGT 8054 Query 111270 CCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAAT 111329 | | |||||||| | ||| || || | |||||| || ||| || |||| | Sbjct 8053 CGGGGGCAGTGTACTCGACAATCTCACAGCACAGGTTGGAGCTGCGAATGGTACCCAGGT 7994 Query 111330 TCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCT 111389 |||||||||| ||||| |||||| || ||||||||||||||| |||| | || |||| Sbjct 7993 TCTTTTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCT 7934 Query 111390 CCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCC 111448 | ||||| | | | ||| || | ||| | | || | ||| | | | | | | Sbjct 7933 CGGTCTGAGCCTCCAAAATGGCGTACCACAGCTTCTG-GGCGCGGATAGTCTCACGACCA 7875 Query 111449 CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAG 111508 || || ||| ||||||| | || || | |||||||| || || | |||| | Sbjct 7874 CGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATCGGCG 7815 Query 111509 AGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTC 111568 ||||| || |||| || || || | |||| ||| | || || ||| || |||||| Sbjct 7814 AGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTC 7755 Query 111569 ATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTC 111627 ||||| || || |||| |||||||| | || | || | | | | || ||||||| | Sbjct 7754 ATGAACAGATCAGGAACCCACAGGGCGTAGAACAAGTCGCGTGCGCGGA-CCTCTTCCTT 7696 Query 111628 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 111687 || ||||| || | || ||||| | || || |||||||| ||||| || || Sbjct 7695 TCCGTGGTTCTTGCGGAGGTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTA 7636 Query 111688 GACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 111743 || || | || || | | | | ||| | || | || ||||| || ||| || Sbjct 7635 GATGGCAAAAGCACCAGGGCGCTTGTTG-CCACCCTGGTCAACGTAGCGAGCGGTGTTGT 7577 Query 111744 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 111803 | | || || ||||| ||||| | || | || || || || || ||| | Sbjct 7576 TGTAGACACGGAGCATGGGAATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGG 7517 Query 111804 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 111863 | | | | | | |||| || | || || || || ||| ||| || || Sbjct 7516 AGCCAGTTGAACGGATGCGGTGGACGTTGAGACCGATTCCACCGGCCGTCTTGGAAATCA 7457 Query 111864 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 111923 ||||| | | || || | ||||| || | ||| ||||||||| || |||| | Sbjct 7456 TGGCACAAGTCTTGAGGGTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCA 7397 Query 111924 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 111983 |||||| | | ||| || | || |||||||| ||||| | ||| || | |||| Sbjct 7396 AGAAGCATGATGCAAGCTGGGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGT 7337 Query 111984 GAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCC 112042 | | || ||| ||| |||||| || ||| || || | | | ||||||| || Sbjct 7336 GGGT-AAAGTACTTTTGAGACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCG 7278 Query 112043 CCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCA 112102 |||||||| || | ||||| ||||| | ||||| |||||| |||| | ||||| Sbjct 7277 CCGTGGATTCCAACAGCGACACGCATAATCATGTGCTGTGGTCTTTCGGCAACCTTGCCA 7218 Query 112103 TCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 |||| || | | || | |||| || || |||| |||||||| Sbjct 7217 TCGATGCGGAGCAAGTATGACCTCTCGAGCGTCTTGAAGCCAAAGTA 7171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986875900800