Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1576 123 8e-23 seq3589 111 5e-19 seq4078 84.2 7e-11 >seq1576 Length=54074 Score = 123 bits (136), Expect = 8e-23 Identities = 272/404 (67%), Gaps = 8/404 (2%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || || ||||| ||||| ||||| | || |||| ||| | ||| || | || | Sbjct 19767 CCAGAGGAAATCTCATCGATGGTCCTGACCAAGATGAGGGAGACTGCCGAGTCGTACCTT 19826 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 | | | | |||| | ||||| | || || || ||||| ||||| || ||||||| Sbjct 19827 GCGGCACCGTTAACA-ACGCTGTCGTCACCGTCCCTGCCTACTTTAACGACTCCCAGCGC 19885 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || || || || | || || || | || || || || Sbjct 19886 CAGGCCACCAAGGATGCCGGTCTGATCGCTGGTCTCAACGTCCTCCGCATTATCAACGAG 19945 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAG---TGACCAAGaaaaaaaT 349768 ||||| || || || ||||| || || ||||| || | || || | || || Sbjct 19946 CCCACCGCGGCTGCCATTGCCTACGGTCTTGACAAGAAGACCACTGGC---GAGCGCAAC 20002 Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828 | || || || || || |||||||||||||| ||||| || || || || |||| ||| Sbjct 20003 GTCCTCATCTTCGACTTGGGTGGTGGTACTTTCGATGTCTCCCTTCTGACCATTGAGGAG 20062 Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || || || ||||| || | ||||| ||||| || || |||||||| || || || || Sbjct 20063 GGCATCTTCGAAGTCAAGTCCACTGCCGGTGACACTCACCTTGGTGGCGAGGACTTCGAC 20122 Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC 349932 || || ||||| || || || || ||||| ||||| ||||| Sbjct 20123 AACCGCCTCGTCAACCACTTCGTCAACGAATTCAAGCG-CAAGC 20165 >seq3589 Length=6346 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| ||||| || || || || Sbjct 3208 CATACCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTC 3267 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || |||| || || || || || || || ||||| || || || |||||||| || Sbjct 3268 TGCCAACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGG 3327 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || | || || || ||||||| || || | || Sbjct 3328 CGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTC 3387 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| ||||| ||||| | || || || || |||||||| Sbjct 3388 GACTTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || | || || || || || || ||||| || || || Sbjct 3436 CATACCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 3495 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || ||||| || || || ||||| | || ||||| ||||| Sbjct 3496 GGCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 3555 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || ||||| || || | || || | ||| Sbjct 3556 CGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTC 3615 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || || | ||||| || || Sbjct 3616 GACTTCGAGGGTGATGGTCTTGCCAGT 3642 >seq4078 Length=18759 Score = 84.2 bits (92), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||| ||||||| ||| || || | ||||||||||||||||| || || Sbjct 9637 CGAGGGACACCCAGTGTAACGTTC---TTTGAAGAGACACCAGCAAAGTGGAACGTGTTG 9581 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||| |||||||| |||||||| || | || || ||||| || Sbjct 9580 AGCGTCATCTGGGTAGCGGGTTCACCAATAGACTGCGCAGCCAGGACACCGACCATCTCG 9521 Query 377578 CCAGGATTGACAATAGC 377594 || || | ||||| || Sbjct 9520 CCGGGGCTCACAATGGC 9504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515142807195644