Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1576 123 8e-23
seq3589 111 5e-19
seq4078 84.2 7e-11
>seq1576
Length=54074
Score = 123 bits (136), Expect = 8e-23
Identities = 272/404 (67%), Gaps = 8/404 (2%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| || ||||| ||||| ||||| | || |||| ||| | ||| || | || |
Sbjct 19767 CCAGAGGAAATCTCATCGATGGTCCTGACCAAGATGAGGGAGACTGCCGAGTCGTACCTT 19826
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
| | | | |||| | ||||| | || || || ||||| ||||| || |||||||
Sbjct 19827 GCGGCACCGTTAACA-ACGCTGTCGTCACCGTCCCTGCCTACTTTAACGACTCCCAGCGC 19885
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || ||||| || || || || | || || || | || || || ||
Sbjct 19886 CAGGCCACCAAGGATGCCGGTCTGATCGCTGGTCTCAACGTCCTCCGCATTATCAACGAG 19945
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAG---TGACCAAGaaaaaaaT 349768
||||| || || || ||||| || || ||||| || | || || | || ||
Sbjct 19946 CCCACCGCGGCTGCCATTGCCTACGGTCTTGACAAGAAGACCACTGGC---GAGCGCAAC 20002
Query 349769 ATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAG 349828
| || || || || || |||||||||||||| ||||| || || || || |||| |||
Sbjct 20003 GTCCTCATCTTCGACTTGGGTGGTGGTACTTTCGATGTCTCCCTTCTGACCATTGAGGAG 20062
Query 349829 GGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888
|| || || ||||| || | ||||| ||||| || || |||||||| || || || ||
Sbjct 20063 GGCATCTTCGAAGTCAAGTCCACTGCCGGTGACACTCACCTTGGTGGCGAGGACTTCGAC 20122
Query 349889 AATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC 349932
|| || ||||| || || || || ||||| ||||| |||||
Sbjct 20123 AACCGCCTCGTCAACCACTTCGTCAACGAATTCAAGCG-CAAGC 20165
>seq3589
Length=6346
Score = 111 bits (122), Expect = 5e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||||| ||||| || || || ||
Sbjct 3208 CATACCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTC 3267
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || |||| || || || || || || || ||||| || || || |||||||| ||
Sbjct 3268 TGCCAACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGG 3327
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || || || || | || || || ||||||| || || | ||
Sbjct 3328 CGGGATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTC 3387
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| ||||| ||||| | || || || || ||||||||
Sbjct 3388 GACTTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 86.0 bits (94), Expect = 2e-11
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || | || || || || || || ||||| || || ||
Sbjct 3436 CATACCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 3495
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || || || || ||||| || || || ||||| | || ||||| |||||
Sbjct 3496 GGCAAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 3555
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || ||||||||||| || | || ||||| || || | || || | |||
Sbjct 3556 CGGGATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTC 3615
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||||| || || | ||||| || ||
Sbjct 3616 GACTTCGAGGGTGATGGTCTTGCCAGT 3642
>seq4078
Length=18759
Score = 84.2 bits (92), Expect = 7e-11
Identities = 101/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| || ||||| ||||||| ||| || || | ||||||||||||||||| || ||
Sbjct 9637 CGAGGGACACCCAGTGTAACGTTC---TTTGAAGAGACACCAGCAAAGTGGAACGTGTTG 9581
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| ||| |||||||| |||||||| || | || || ||||| ||
Sbjct 9580 AGCGTCATCTGGGTAGCGGGTTCACCAATAGACTGCGCAGCCAGGACACCGACCATCTCG 9521
Query 377578 CCAGGATTGACAATAGC 377594
|| || | ||||| ||
Sbjct 9520 CCGGGGCTCACAATGGC 9504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515142807195644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |