Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 237 2e-57
>seq5249
Length=10599
Score = 237 bits (262), Expect = 2e-57
Identities = 395/566 (70%), Gaps = 6/566 (1%)
Strand=Plus/Plus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
||| |||||| |||| ||| |||||||||||||| ||||| | || ||| |||||||
Sbjct 7299 TGAAACGTACAACTTGATGTCTCAAAAGTACTTTACCCACGCTTCTCCCACCTTGTTCAA 7358
Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
||||||||| | || ||| | | |||||| || | | |||||||| |||
Sbjct 7359 CGCTGGTACCCCCAAGCCCCAGCTTGCATCATGCTTCTTGATCGACATGAAGGAGGACAG 7418
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
||||| ||||||||||| || |||||| |||||| || |||||| | | |||||
Sbjct 7419 CATCGAGGGCATCTACGACACCCTCAAGACTTGTGCCATGATTTCCAAGACGGCCGGTGG 7478
Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479
|||||| || || || | || ||||| | | ||| | || || || |||
Sbjct 7479 AATCGGTCTCAACG--TCCACCGCATCCGTTCAACTGGCTCCTACATTGCTGGTACCAAC 7536
Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539
||| | || | || | | || |||||||| |||| ||||||||| || || |||||
Sbjct 7537 GGCACCTCCAACGGCCTGATTCCCATGCTCCGTGTCTACAACAACACCGCTCGCTACGTT 7596
Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599
|||||||||| |||||| || | || ||||||||||| ||||| |||||||||
Sbjct 7597 GACCAGGGTGGCAACAAGCGCCCTGGTGCTTTTGCCATCTACCTGGAGCCTTGGCACGCC 7656
Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659
||| | | || ||||| || || ||| || || | |||||| | ||| ||
Sbjct 7657 GACGTCTTCCCCTTCCTCGACCTCCGCAAGAACCACGGAAAGGAAGAGGTCCGCGCACGC 7716
Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718
||| |||| ||| || |||||| |||| || || |||||| | || ||| | |||
Sbjct 7717 GACTTGTTCTAC-GCCCTGTGGGTTCCTGATCTGTTCATGAAGCGTGTCGAGCAAAACGG 7775
Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778
|| ||| || |||||||| ||||| ||| || ||| | ||||||||| || ||
Sbjct 7776 CGATTGGACTCTCATGTGCCCTCACGAGGCCCCGGGTCTCGCCGATGTCTACGGCGACGA 7835
Query 53779 GTTTAACGAGATGTATCGGACGTACG 53804
|||| | ||| ||||| || |||||
Sbjct 7836 GTTTGAGGAGCTGTATGAGAGGTACG 7861
Score = 96.9 bits (106), Expect = 4e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| | ||| ||| |||||||||||| | ||| | | | | ||| ||
Sbjct 8767 TCAAGGCCCTCTACAAGACTGTGTGGGAGATTTCTCAGCGCAACATCGTCCAGATGGCTG 8826
Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847
| || |||||||| | ||||||||||| || || || |||||| |||| || | |||
Sbjct 8827 CCGACCGTGGTGCCTTTATCGACCAGTCTCAATCGCTCAACATCCACATGAAGGAGCCTA 8886
Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907
| ||| |||| | | || ||||||||| || |||||| || || |||||||| |
Sbjct 8887 CGATGGGCAAGATCACTTCCATGCACTTTGCTGGCTGGAAGCTTGGTCTGAAGACGGGCA 8946
Query 55908 TGTACTATCTGCGGAC 55923
||||||| ||||| ||
Sbjct 8947 TGTACTACCTGCGCAC 8962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547176682530400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |