Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq5249 235 6e-57
seq3589 172 6e-38
seq2177 131 2e-25
seq2758 89.7 6e-13
seq1456 84.2 2e-11
>seq5249
Length=10599
Score = 235 bits (260), Expect = 6e-57
Identities = 797/1224 (65%), Gaps = 22/1224 (2%)
Strand=Plus/Minus
Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600
||||||||||| ||||||||||||| || ||||| || || || ||| | ||| |
Sbjct 8453 CCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAACCTTCGTACGACGAGTAAGC 8394
Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660
|| ||| |||| ||||||||| ||| | | ||||| |||| || ||| ||| ||
Sbjct 8393 TCCATCCTTCTTAGCCAGCTCAATCGAGGCAGTCAGGGCACCGTG-TAGATGGTCTCGAA 8335
Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720
| |||| | | |||| || |||||| | || || | | |||
Sbjct 8334 AATCTGAATGTTAAGCTGCCTGGCCTCGGGAGAGTCGAAAGCCATGCGGAGGGCGAGGAA 8275
Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC 80780
| || || ||||| | || |||| || ||||||||||||||| |||| | || |
Sbjct 8274 AGCATCGGCAAGGCCGTTGACACCGACAGCAATCGGGCGGTGGCGCATGTT-GCTCTTCC 8216
Query 80781 -GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACA 80838
|||||| |||| ||||| || | ||||||| ||||||||| | || ||
Sbjct 8215 TGGCCTCGGGAACGGGGTAGTGATTGATGTCGATGATCTTGTTCAGGTT-CTTGACAAGG 8157
Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAAT 80892
||| | || || || || || |||| |||| | | ||| | | || |||||
Sbjct 8156 ACCTGGGTGACCTCGTGCAGCTTCTTGAAGTTGTAGACACCATTCTCGACATCGACAAAG 8097
Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952
| |||||| |||||| |||| ||||| || || ||||| || | | || |||||
Sbjct 8096 GTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCG 8037
Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012
|| || || ||||| || || ||| ||||||||||| || ||||| ||||
Sbjct 8036 ACAATCTCACAGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTG 7977
Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072
||||||||||||||||||| |||| | ||| | ||||||||| ||| | || |
Sbjct 7976 CGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAA 7917
Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132
||||||| ||| | || | || || || || |||||| | | |||
Sbjct 7916 ATGGCGTACCACAGCTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTAC 7857
Query 81133 TTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191
| | || ||| || || |||| | | |||| | || | ||| | ||| |||||
Sbjct 7856 CTCTCATACAGC-TCCTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTG 7798
Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251
||||||||| || ||| ||| || | ||| ||| ||||||||| ||||| |
Sbjct 7797 AGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAAC 7738
Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311
||| |||||| ||||| |||||| ||| |||| || | || ||||| ||| |
Sbjct 7737 CCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678
Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTT 81371
||||| ||| | || ||| || ||||| |||||||| || | ||| | | ||
Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618
Query 81372 GCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428
||| ||||||||||| ||||| || || || ||| | ||||| | ||| ||
Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558
Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486
|| | || | || ||||| ||||| | || || || | | || | |
Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498
Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546
|| ||| |||||||| ||||| | | ||| |||||| ||||| || | |
Sbjct 7497 GTGGACGTTG--AGACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440
Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606
|| || || || ||||||||||| || | |||||||| | |||||| || || | |
Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380
Query 81607 TGAGGGCTT-TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665
|| |||||| | || || ||||||| || || | ||||| | || || |
Sbjct 7379 TG-GGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTG 7321
Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725
||||||| || || ||||| || | | ||| | || ||||| || || | |||
Sbjct 7320 AGACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGC 7261
Query 81726 TACACGCATAAACATGTACTGGGG 81749
|||||||||| ||||| ||| ||
Sbjct 7260 GACACGCATAATCATGTGCTGTGG 7237
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||||||||| || || ||||||||| | ||||
Sbjct 8968 GCCTGAGTGCGCAGGTAGTACATGCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGC 8909
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| ||| | | || || | || |||| |||||| || || ||||||||
Sbjct 8908 ATGGAAGTGATCTTGCCCATCGTAGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGG 8849
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180
||| || || ||||| || || |||||
Sbjct 8848 TCGATAAAGGCACCACGGTCGGCAGCCAT 8820
>seq3589
Length=6346
Score = 172 bits (190), Expect = 6e-38
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||| ||||| |||||||| |||||
Sbjct 3210 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTTGAGGTGGAGTCTTCG 3151
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 3150 GATACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 3091
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| || || ||||| || ||||||| || || | || ||||| ||
Sbjct 3090 CAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAAC 3031
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||||||| || | || | ||||| |||||||| ||
Sbjct 3030 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGTCTCCGCGGTGGTCA 2981
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||||||||| ||||| ||||| || |||||
Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || || || ||||||||||| || || || || |||
Sbjct 3378 GACACGATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCAG 3319
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || |||||||| || ||||| |||||||| | | || | |||||||| ||
Sbjct 3318 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAAC 3259
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || || || | || | ||||| || |||||
Sbjct 3258 ATCCAAAAGGAGTCAACCCTGCACTTGGTGCTTCGTCTCCGTGGTGG 3212
Score = 129 bits (142), Expect = 7e-25
Identities = 151/203 (74%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || |||||||| ||||| || | ||| | || | ||| |
Sbjct 3920 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 3861
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| || || || ||| |||||||||| || || ||||| |||
Sbjct 3860 AAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGCAAG 3802
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||||| || ||||| || ||||| || |||| ||||| || || |||||
Sbjct 3801 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCAC 3742
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || || || ||
Sbjct 3741 CTCGTCCTTCGCCTGCGTGGCGG 3719
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| |||||||| || || || || || || || || | ||| | ||| | ||| |
Sbjct 3642 ACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGTCC 3583
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||| || || || ||||||||||| | || || || || |||
Sbjct 3582 AAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3523
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||| | ||| ||||| || ||||| || | || ||||||||||| || ||
Sbjct 3522 CAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 3463
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | ||||| ||||||||
Sbjct 3462 TTGGTGCTCCGTCTCCGCGGTGG 3440
>seq2177
Length=34801
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| || || |||||||| || || || ||||||||||| || | |||
Sbjct 6023 CTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCAT 6082
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| ||
Sbjct 6083 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 6142
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || ||||| |||||||| | || ||||| | ||||| || |||| ||
Sbjct 6143 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 6202
Query 27594 GG 27595
||
Sbjct 6203 GG 6204
>seq2758
Length=2532
Score = 89.7 bits (98), Expect = 6e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| || || || ||||||||||| || || || || || ||||| ||||||
Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || || || | ||||| || |||| ||||| || || || || || || ||
Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675
Query 27619 CGTCTTCGCGGTGG 27632
|| || ||||| ||
Sbjct 1676 CGCCTGCGCGGCGG 1689
>seq1456
Length=47496
Score = 84.2 bits (92), Expect = 2e-11
Identities = 282/433 (65%), Gaps = 6/433 (1%)
Strand=Plus/Minus
Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043
||||| | |||||| || |||||||| | || ||||| |||| | || || |
Sbjct 11021 GACGGATTGAAGCCTGGTCAACGCAAGGTCTTGTATACCTGCTTCAAAAGAAATGTGAGG 10962
Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAA-ACGGCCTATCACCA 32102
| ||||| ||||| | || | || |||| | || ||| || |||| | |
Sbjct 10961 AAGGACATCAAGGTCATTGAACTTGCTGGTCACGTCGGAG-GCATGACAAACTATGCCTA 10903
Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162
|| || || || |||||| || ||||| ||||||||||||||||| || | ||
Sbjct 10902 TGGTGATGCCTCTCTCCAGCAGACGATTGTTGGTCTTGCTCAGAACTTTGTTGGCTCGAA 10843
Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222
||| | ||| | | ||||| ||| | ||||| |||| || || || | ||
Sbjct 10842 CAACATCAACGTCTTGGAGCCTAGTGGCAACTTTGGTTCCCGCTTCCAAGGAGGTAGCGA 10783
Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTCGCACCTTCGACGCGCAAGATTTTC 32280
||| || ||| |||||||||| | ||| | | |||| |||| | | || ||||||
Sbjct 10782 TGCCGCCAGCGCCCGTTACATTTACACGAGGCTGTCGC-CCTTTG-CTCGTCGCATTTTC 10725
Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
|| | | ||||| || |||||| ||| || || || || || |||| ||
Sbjct 10724 CACACAACTGACGAGCCGCTGCTCACTTACGATCAAGACGATGGCAAGACTATCGAACCA 10665
Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400
||| || || || ||||||||| | || ||||| ||||| |||||||| ||
Sbjct 10664 ACAAATTACGTCCCAGTTCTACCGATGATCCTTGTCAACGGCGCAGACGGCATCGGCACA 10605
Query 32401 GGGTTCAGTTGCT 32413
|| | |||| ||
Sbjct 10604 GGTTGGAGTTCCT 10592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570269423197760
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