Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5249 235 6e-57 seq3589 172 6e-38 seq2177 131 2e-25 seq2758 89.7 6e-13 seq1456 84.2 2e-11 >seq5249 Length=10599 Score = 235 bits (260), Expect = 6e-57 Identities = 797/1224 (65%), Gaps = 22/1224 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 ||||||||||| ||||||||||||| || ||||| || || || ||| | ||| | Sbjct 8453 CCACATGTCGTATTGCAAGATGCCCTGAGAGGCCGGCGAACCTTCGTACGACGAGTAAGC 8394 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 || ||| |||| ||||||||| ||| | | ||||| |||| || ||| ||| || Sbjct 8393 TCCATCCTTCTTAGCCAGCTCAATCGAGGCAGTCAGGGCACCGTG-TAGATGGTCTCGAA 8335 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 | |||| | | |||| || |||||| | || || | | ||| Sbjct 8334 AATCTGAATGTTAAGCTGCCTGGCCTCGGGAGAGTCGAAAGCCATGCGGAGGGCGAGGAA 8275 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC 80780 | || || ||||| | || |||| || ||||||||||||||| |||| | || | Sbjct 8274 AGCATCGGCAAGGCCGTTGACACCGACAGCAATCGGGCGGTGGCGCATGTT-GCTCTTCC 8216 Query 80781 -GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT-AACA 80838 |||||| |||| ||||| || | ||||||| ||||||||| | || || Sbjct 8215 TGGCCTCGGGAACGGGGTAGTGATTGATGTCGATGATCTTGTTCAGGTT-CTTGACAAGG 8157 Query 80839 ACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCC--CTTC-ACAAAT 80892 ||| | || || || || || |||| |||| | | ||| | | || ||||| Sbjct 8156 ACCTGGGTGACCTCGTGCAGCTTCTTGAAGTTGTAGACACCATTCTCGACATCGACAAAG 8097 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | |||||| |||||| |||| ||||| || || ||||| || | | || ||||| Sbjct 8096 GTGGGAAGGGCCAGGGAGGCCAAGTTGCAGACAGCAACCTCGTCGGGGGCAGTGTACTCG 8037 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 || || || ||||| || || ||| ||||||||||| || ||||| |||| Sbjct 8036 ACAATCTCACAGCACAGGTTGGAGCTGCGAATGGTACCCAGGTTCTTTTGGTTGCTCTTG 7977 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 ||||||||||||||||||| |||| | ||| | ||||||||| ||| | || | Sbjct 7976 CGGTTGCAAGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCCAAA 7917 Query 81073 ATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATAC 81132 ||||||| ||| | || | || || || || |||||| | | ||| Sbjct 7916 ATGGCGTACCACAGCTTCTGGGCGCGGATAGTCTCACGACCACGGCCTTCCCTCTCGTAC 7857 Query 81133 TTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTT 81191 | | || ||| || || |||| | | |||| | || | ||| | ||| ||||| Sbjct 7856 CTCTCATACAGC-TCCTCAAACTCGTCGCCGTAGACATCGGCGAGACCCGGGGCCTCGTG 7798 Query 81192 AGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGAT 81251 ||||||||| || ||| ||| || | ||| ||| ||||||||| ||||| | Sbjct 7797 AGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATGAACAGATCAGGAAC 7738 Query 81252 CCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAA 81311 ||| |||||| ||||| |||||| ||| |||| || | || ||||| ||| | Sbjct 7737 CCACAGGGCGTAGAACAAGTCGCGTGCGCGGACCTCTTCCTTTCCGTGGTTCTTGCGGAG 7678 Query 81312 CTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTT 81371 ||||| ||| | || ||| || ||||| |||||||| || | ||| | | || Sbjct 7677 GTCGAGGAAGGGGAAGACGTCGGCGTGCCAAGGCTCCAGGTAGATGGCAAAAGCACCAGG 7618 Query 81372 GCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGG 81428 ||| ||||||||||| ||||| || || || ||| | ||||| | ||| || Sbjct 7617 GCGCTTGTTGCCACCCTGGTCAACGTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGG 7558 Query 81429 GATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CC 81486 || | || | || ||||| ||||| | || || || | | || | | Sbjct 7557 AATCAGGCCGTTGGAGGTGCCGTTGGTACCAGCAATGTAGGAGCCAGTTGAACGGATGCG 7498 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 || ||| |||||||| ||||| | | ||| |||||| ||||| || | | Sbjct 7497 GTGGACGTTG--AGACCGATTCCACCGGCCGTCTTGGAAATCATGGCACAAGTCTTGAGG 7440 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || || || || ||||||||||| || | |||||||| | |||||| || || | | Sbjct 7439 GTGTCGTAGATGCCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCATGATGCAAGC 7380 Query 81607 TGAGGGCTT-TTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTT 81665 || |||||| | || || ||||||| || || | ||||| | || || | Sbjct 7379 TG-GGGCTTGGGGGTACCAGCGTTGAACAAGGTGGGAGAAGCGTGGGTAAAGTACTTTTG 7321 Query 81666 TGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGC 81725 ||||||| || || ||||| || | | ||| | || ||||| || || | ||| Sbjct 7320 AGACATCAAGTTGTACGTTTCAATGGCCTTTTCAATGTTCTCGCCGTGGATTCCAACAGC 7261 Query 81726 TACACGCATAAACATGTACTGGGG 81749 |||||||||| ||||| ||| || Sbjct 7260 GACACGCATAATCATGTGCTGTGG 7237 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||||||||| || || ||||||||| | |||| Sbjct 8968 GCCTGAGTGCGCAGGTAGTACATGCCCGTCTTCAGACCAAGCTTCCAGCCAGCAAAGTGC 8909 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| ||| | | || || | || |||| |||||| || || |||||||| Sbjct 8908 ATGGAAGTGATCTTGCCCATCGTAGGCTCCTTCATGTGGATGTTGAGCGATTGAGACTGG 8849 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||| || || ||||| || || ||||| Sbjct 8848 TCGATAAAGGCACCACGGTCGGCAGCCAT 8820 >seq3589 Length=6346 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| ||||| |||||||| ||||| Sbjct 3210 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTTGAGGTGGAGTCTTCG 3151 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||||||||||||||| ||||| || |||||| Sbjct 3150 GATACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 3091 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || ||||||| || || | || ||||| || Sbjct 3090 CAGCGCCTGATTTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAAC 3031 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||||| || | || | ||||| |||||||| || Sbjct 3030 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGTCTCCGCGGTGGTCA 2981 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| ||||| ||||| || ||||| Sbjct 3438 ATGCAGATCTTCGTCAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCGTCA 3379 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || || ||||||||||| || || || || ||| Sbjct 3378 GACACGATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATCCCGCCCGATCAG 3319 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||| | | || | |||||||| || Sbjct 3318 CAGCGCCTGATTTTTGCAGGCAAGCAGCTCGAGGACGGCAGAACGTTGGCAGACTACAAC 3259 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | || | ||||| || ||||| Sbjct 3258 ATCCAAAAGGAGTCAACCCTGCACTTGGTGCTTCGTCTCCGTGGTGG 3212 Score = 129 bits (142), Expect = 7e-25 Identities = 151/203 (74%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || |||||||| ||||| || | ||| | || | ||| | Sbjct 3920 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGTCC 3861 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||| |||||||||| || || ||||| ||| Sbjct 3860 AAGATCCAGGACAAGGAGGGCATCCCCCCTGAC-AGCAGCGTCTCATCTTCGCTGGCAAG 3802 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| || ||||| || |||| ||||| || || ||||| Sbjct 3801 CAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTCAC 3742 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || || || Sbjct 3741 CTCGTCCTTCGCCTGCGTGGCGG 3719 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || || || || || || | ||| | ||| | ||| | Sbjct 3642 ACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGTCC 3583 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| |||||||| || || || ||||||||||| | || || || || ||| Sbjct 3582 AAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 3523 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||| | ||| ||||| || ||||| || | || ||||||||||| || || Sbjct 3522 CAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCCAC 3463 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| |||||||| Sbjct 3462 TTGGTGCTCCGTCTCCGCGGTGG 3440 >seq2177 Length=34801 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || || ||||||||||| || | ||| Sbjct 6023 CTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCAT 6082 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| || Sbjct 6083 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 6142 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||| | || ||||| | ||||| || |||| || Sbjct 6143 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 6202 Query 27594 GG 27595 || Sbjct 6203 GG 6204 >seq2758 Length=2532 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || ||||||||||| || || || || || ||||| |||||| Sbjct 1556 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1615 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || || | ||||| || |||| ||||| || || || || || || || Sbjct 1616 GACGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGACGCTCCACCTGGTGCTG 1675 Query 27619 CGTCTTCGCGGTGG 27632 || || ||||| || Sbjct 1676 CGCCTGCGCGGCGG 1689 >seq1456 Length=47496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 282/433 (65%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| | |||||| || |||||||| | || ||||| |||| | || || | Sbjct 11021 GACGGATTGAAGCCTGGTCAACGCAAGGTCTTGTATACCTGCTTCAAAAGAAATGTGAGG 10962 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAA-ACGGCCTATCACCA 32102 | ||||| ||||| | || | || |||| | || ||| || |||| | | Sbjct 10961 AAGGACATCAAGGTCATTGAACTTGCTGGTCACGTCGGAG-GCATGACAAACTATGCCTA 10903 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 || || || || |||||| || ||||| ||||||||||||||||| || | || Sbjct 10902 TGGTGATGCCTCTCTCCAGCAGACGATTGTTGGTCTTGCTCAGAACTTTGTTGGCTCGAA 10843 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| | ||| | | ||||| ||| | ||||| |||| || || || | || Sbjct 10842 CAACATCAACGTCTTGGAGCCTAGTGGCAACTTTGGTTCCCGCTTCCAAGGAGGTAGCGA 10783 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCACCCG--TCTCGCACCTTCGACGCGCAAGATTTTC 32280 ||| || ||| |||||||||| | ||| | | |||| |||| | | || |||||| Sbjct 10782 TGCCGCCAGCGCCCGTTACATTTACACGAGGCTGTCGC-CCTTTG-CTCGTCGCATTTTC 10725 Query 32281 GACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340 || | | ||||| || |||||| ||| || || || || || |||| || Sbjct 10724 CACACAACTGACGAGCCGCTGCTCACTTACGATCAAGACGATGGCAAGACTATCGAACCA 10665 Query 32341 GTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACG 32400 ||| || || || ||||||||| | || ||||| ||||| |||||||| || Sbjct 10664 ACAAATTACGTCCCAGTTCTACCGATGATCCTTGTCAACGGCGCAGACGGCATCGGCACA 10605 Query 32401 GGGTTCAGTTGCT 32413 || | |||| || Sbjct 10604 GGTTGGAGTTCCT 10592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570269423197760