Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq382 127 2e-24 >seq382 Length=29631 Score = 127 bits (140), Expect = 2e-24 Identities = 270/402 (67%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 30058 GCTCACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 ||| ||||| ||||| | ||||| |||||||| || || ||||| | ||| Sbjct 28327 GCTGACGTAGAACTGCGCAAACATG---TGGCACGGCGGCAGGGCCATCTTCTTGAGGTC 28271 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTC 30174 |||||||| |||| || ||||||||||| ||| || |||| | | ||| Sbjct 28270 GGCCGGGTTCCACGCGCTCATGATGATGCGCCGGTCGAAGGGCTTGTGGCGCAGCTTGTC 28211 Query 30175 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30234 | | ||| |||||| || || ||| |||| |||||| || ||| ||| Sbjct 28210 GATGACGTCGGCCAGCTGGTCGACGCCCTGTCCCGTGTAGTCGGCGTGGCAGTCGACGTA 28151 Query 30235 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 30294 || || || || |||| |||||||||||||||||| || |||||||| ||||| || | Sbjct 28150 GTCGGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCCTCCTCGCG 28091 Query 30295 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 30354 ||| | | ||| |||||| || | | || |||||| ||||||||||||| | Sbjct 28090 GTGGCCCAGTCCCACGCTGTCCAGGAACGCCCGCGACCCGTTGCCGTCCCAGATCTTGAT 28031 Query 30355 CCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 |||| || | ||| ||||| ||| || || |||||| |||||||| | Sbjct 28030 CCCCGCGTCTGTCAGCGGCTTGGATGATGTCCTGCCCGAGATGAACCAGAGCAGCTCGGC 27971 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | |||||| | ||||| | |||||| |||||||| || Sbjct 27970 GATGACGGCGCGCAGGAAGACGCGCTTGGTTGTGAGGAGTGG 27929 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 29851 GGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTC 29910 |||||| | ||||||||| || |||| || || | || ||||||||||| ||||| Sbjct 28594 GGGCTCGCGCTCGAGCTGCTGCTGAAGCGCGTCGACATGGTCGAGGTAGACGTGCGCGTC 28535 Query 29911 TCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | |||| | | || || | || || |||||| |||| ||||| || Sbjct 28534 GCCCATGGTGTGCGTCAGCGAGCCGGGCACCAGGTCGCAGACGTGTGCCAGCATGTGGGT 28475 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 ||| || | ||||||||| ||||| ||||| || ||||| |||||||| | || | ||| Sbjct 28474 GAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCCCATGTCGCAGGAGCGCTG 28415 Query 30031 GTAGAGC 30037 ||| ||| Sbjct 28414 GTACAGC 28408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281936432816