Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq382 134 1e-26
>seq382
Length=29631
Score = 134 bits (148), Expect = 1e-26
Identities = 214/301 (71%), Gaps = 6/301 (2%)
Strand=Plus/Plus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTC 34378
|||| | ||||||||||||| ||||||| || | || ||||||| ||| ||| |
Sbjct 28027 GGGGATCAAGATCTGGGACGGCAACGGGTCGCGGGCGTTCCTGGACA-GCGTGGGACTGG 28085
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
| | || |||||||||||| ||||||| || ||||||||||||||| | ||||||||
Sbjct 28086 GCCAC-CGCGAGGAGGGCGACCTGGGCCCCGTGTACGGGTTCCAGTGGCGGCACTTTGGC 28144
Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498
|| || || | || | || ||||| |||||||||| | ||||||||| ||
Sbjct 28145 GCCGACTACGTCGACTGCCACGCCGACTACACGGGACAGGGCGTCGACCAGCTGGCCGAC 28204
Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558
|| ||||||| || | || || ||| | | ||| | ||| |||||||||||
Sbjct 28205 GTCATCGACAAGCTGCGCCACAAGCCCTTCGACCGGCGCATCATCATGAGCGCGTGGAAC 28264
Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT 34617
||| || ||| |||||| || || |||||||||| | ||| || ||||||||
Sbjct 28265 CCGGCCGACCTCAAGAAGATGGCCCTGCCGCCGTGCCACA-TGTTTGCGCAGTTCTACGT 28323
Query 34618 C 34618
|
Sbjct 28324 C 28324
Score = 134 bits (148), Expect = 1e-26
Identities = 214/301 (71%), Gaps = 6/301 (2%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| | |||||||||| || || |||||| ||| || ||
Sbjct 28324 GACGTAGAACTGCGCAAACA-TGTGGCACGGCGGCAGGGCCATCTTCTTGAGGTCGGCCG 28266
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| ||| | ||| | | ||| || || | || ||||||| |
Sbjct 28265 GGTTCCACGCGCTCATGATGATGCGCCGGTCGAAGGGCTTGTGGCGCAGCTTGTCGATGA 28206
Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905
||| ||||||||| | |||||||||| ||||| || | || | || || |
Sbjct 28205 CGTCGGCCAGCTGGTCGACGCCCTGTCCCGTGTAGTCGGCGTGGCAGTCGACGTAGTCGG 28146
Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965
| |||||||| | ||||||||||||||| || ||||||| |||||||||||| || | |
Sbjct 28145 CGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCCAGGTCGCCCTCCTCGCG-GTGG 28087
Query 6966 GGAA--CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC 7023
| ||| ||| ||||||| || | || ||||||| ||||||||||||| | |||
Sbjct 28086 CCCAGTCCCACGC-TGTCCAGGAACGCCCGCGACCCGTTGCCGTCCCAGATCTTGATCCC 28028
Query 7024 C 7024
|
Sbjct 28027 C 28027
Score = 86.0 bits (94), Expect = 6e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 34642 GCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGC 34701
||| || || || || | |||||||| | || ||||| ||||||||||| || |||||
Sbjct 28408 GCTGTACCAGCGCTCCTGCGACATGGGCCTCGGCGTGCCCTTCAACATTGCCAGCTACGC 28467
Query 34702 TCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATAC 34761
|||||||| ||||| | || || ||| | |||| || || |||| ||| ||
Sbjct 28468 CCTGCTCACCCACATGCTGGCACACGTCTGCGACCTGGTGCCCGGCTCGCTGACGCACAC 28527
Query 34762 GTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACG 34821
|||| || ||||| ||||||| |||| |||| ||| | | ||||| | ||
Sbjct 28528 CATGGGCGACGCGCACGTCTACCTCGACCATGTCGACGCGCTTCAGCAGCAGCTCGAGCG 28587
Query 34822 AGAGCCCCGACCGTTCCCCCAGCTC 34846
|||||||| ||||| | ||||
Sbjct 28588 CGAGCCCCGCGACTTCCCGCTGCTC 28612
Score = 86.0 bits (94), Expect = 6e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558
|||| | ||||| |||||||| || | ||||| | | ||| |||| ||||
Sbjct 28612 GAGCAGCGGGAAGTCGCGGGGCTCGCGCTCGAGCTGCTGCTGAAGCGCGTCGACATGGTC 28553
Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618
||||||| ||||| || |||| || ||| |||| || || |||| | |||
Sbjct 28552 GAGGTAGACGTGCGCGTCGCCCATGGTGTGCGTCAGCGAGCCGGGCACCAGGTCGCAGAC 28493
Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678
|| || | ||||| |||||||| ||||| || ||||||||||| ||||| || | ||
Sbjct 28492 GTGTGCCAGCATGTGGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGGCC 28433
Query 6679 CATGTCTCCCGATCGTTGATAGAGC 6703
|||||| | || || || || |||
Sbjct 28432 CATGTCGCAGGAGCGCTGGTACAGC 28408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448230192346560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |