Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 154 3e-32
seq2177 147 5e-30
seq5249 111 4e-19
seq2758 84.2 5e-11
>seq3589
Length=6346
Score = 154 bits (170), Expect = 3e-32
Identities = 149/190 (78%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| || ||||| || |||||||| || || || ||||| | |||||
Sbjct 3734 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 3793
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| || || || | |||||| || | || |||||||||
Sbjct 3794 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCC 3852
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||||||||| ||| || ||||| || ||||| |||
Sbjct 3853 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 3912
Query 211083 TTTCCCGTGA 211092
|| || ||||
Sbjct 3913 TTGCCAGTGA 3922
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| ||||||||||| || |||||||| || || || | |||| |||||
Sbjct 2999 AGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCATCC 3058
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||| || |||| || |||||||||
Sbjct 3059 TCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 3118
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| || || || || ||||| || || ||||||
Sbjct 3119 TGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGTAATCGTC 3178
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 3179 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 127 bits (140), Expect = 5e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||| || || || ||||| || || |||||||| | || ||
Sbjct 3455 AGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCC 3514
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| | ||| || |||||||| || | || ||||| |||
Sbjct 3515 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 3574
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||||||||| || ||| || ||||| ||||| |||
Sbjct 3575 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATGGTC 3634
Query 211083 TTTCCCGTGA 211092
|| || ||||
Sbjct 3635 TTGCCAGTGA 3644
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| ||||||||||| || || || | || || || ||
Sbjct 3227 AGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCC 3286
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||||||||| || || ||||| || || || || || | || ||||||||
Sbjct 3287 TCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCT 3346
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || ||||| || || || || || || || |||
Sbjct 3347 TGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTC 3406
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | |||||| || || | ||||||
Sbjct 3407 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
>seq2177
Length=34801
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| ||||||||
Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || ||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| ||||||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024
>seq5249
Length=10599
Score = 111 bits (122), Expect = 4e-19
Identities = 191/276 (69%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||||||||| | ||||| || || ||||| |||||||| | ||
Sbjct 7995 GTTCTTTTGGTTGCTCTTGCGGTTGCAA---GCGTCCTTGTAGAGCATGAAGGGGTTGCC 7939
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | |||||| | | |||| | ||| |||| |||||| |||| |||||
Sbjct 7938 GGTCTCGGTCTGAGCCTCCAAAATGGCGTACCACAGCTTCTGGGCGCGGATAGTCTCACG 7879
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| ||||| |||||||| | | || |||||||| || || || ||||||||
Sbjct 7878 ACCACGGCCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATC 7819
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
||||||| || ||||| | ||||| | |||| |||| | |||| || || || ||
Sbjct 7818 GGCGAGACCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACG 7759
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|||||||| || |||| ||| | ||| |||||
Sbjct 7758 CTTCATGAACAGATCAGGAACCCACAGGGCGTAGAA 7723
>seq2758
Length=2532
Score = 84.2 bits (92), Expect = 5e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || || ||||| || |||||||| || || | || || | || ||
Sbjct 1674 AGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCGTCC 1615
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|| ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||
Sbjct 1614 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 1556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159066632802020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |