Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3589 140 8e-28 seq2177 116 9e-21 seq5249 98.7 2e-15 >seq3589 Length=6346 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || ||||||| ||||| || ||||| ||||| || || Sbjct 3227 AGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCC 3286 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || || || || || |||||||| ||||| ||||||||| Sbjct 3287 TCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCT 3346 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || |||||||| | || || || | ||| || ||| Sbjct 3347 TGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTC 3406 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | ||||| Sbjct 3407 TTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| || || |||| ||||| |||||||| || | ||||| Sbjct 2999 AGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCATCC 3058 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || ||||| || ||||| || |||||||| Sbjct 3059 TCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 3118 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| || || || | ||||| || | ||| |||||| Sbjct 3119 TGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGTAATCGTC 3178 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 3179 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210 Score = 120 bits (132), Expect = 7e-22 Identities = 140/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| ||||| ||||| | || | ||||| Sbjct 3734 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 3793 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || | ||| || || || || |||||||| Sbjct 3794 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCC 3852 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| || || || | ||||| ||| Sbjct 3853 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 3912 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3913 TTGCCAGT 3920 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||| || || | ||||| ||||| | || | || || Sbjct 3455 AGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCGTCC 3514 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| | || || ||||| ||||| || || ||||| || Sbjct 3515 TCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 3574 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| || | ||| || || | ||||| ||| Sbjct 3575 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGACTTCGAGGGTGATGGTC 3634 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3635 TTGCCAGT 3642 >seq2177 Length=34801 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | || || || |||||||| || |||||||| Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024 >seq5249 Length=10599 Score = 98.7 bits (108), Expect = 2e-15 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 ||||||||||||||| | || ||||| |||||||| || | ||||||| ||| ||||| Sbjct 7871 CCTTCCCTCTCGTACCTCTCATACAGCTCCTCAAACTCGTCGCCGTAGACATCGGCGAGA 7812 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || | ||||| | |||| ||||||| || | || || | ||||||| Sbjct 7811 CCCGGGGCCTCGTGAGGGCACATGAGAGTCCAATCGCCGTTTTGCTCGACACGCTTCATG 7752 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAA-AAGT 193772 || || |||| ||| | ||||||||| |||| Sbjct 7751 AACAGATCAGGAACCCACAGGGCGTAGAACAAGT 7718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192443374549112