Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 120 7e-22
seq2177 86.0 1e-11
>seq3589
Length=6346
Score = 120 bits (132), Expect = 7e-22
Identities = 152/208 (73%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| |||||||||||||| || || || ||||| || || || |
Sbjct 3232 CAAG-TGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGCCAACGTTCTGCCGTCCTCGA 3290
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || || || || | |||||| || | || ||| || ||||| ||||| |
Sbjct 3291 GCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGGGATACCCTCCTTGTCTTGGA 3350
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||| | || | ||||||| ||| |||||||| ||||| || ||||
Sbjct 3351 TCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGACTTCAAGCGTAATGGTCTTGC 3410
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | |||||| ||||||| ||||||
Sbjct 3411 CGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 111 bits (122), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || ||||| ||||| || ||||||||||| ||||| || || |
Sbjct 2992 GAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCG 3051
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || ||||| || || | ||||||||||| | || || ||
Sbjct 3052 GCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTC 3111
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || ||||| | || | | || ||| ||| || ||||| ||
Sbjct 3112 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCACCTCAAGCGT 3171
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || ||||| || | ||||| ||||||| ||||||
Sbjct 3172 AATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/190 (71%), Gaps = 1/190 (1%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || ||||| || ||||| || ||||||||||| ||||| | || | |||||
Sbjct 3734 AGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCC 3793
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||| ||| | | ||| || ||||| ||
Sbjct 3794 TCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGGGATGCCCTCCTTGTCC 3852
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | | |||| || ||| || ||||| || || ||
Sbjct 3853 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGGGTGATGGTC 3912
Query 152073 TTGCCCGTGA 152082
||||| ||||
Sbjct 3913 TTGCCAGTGA 3922
>seq2177
Length=34801
Score = 86.0 bits (94), Expect = 1e-11
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | || | || || || || || |||||||||||
Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||||| | || || ||||| || || || || |||||| | ||
Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| | |||| || ||| || || || || || || |||||||| || ||||| ||||||
Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAG 6023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153735825424908
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |