Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03-
31] 5,748 sequences; 31,127,197 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3589 168 1e-36
seq2177 143 6e-29
seq1666 113 9e-20
seq2758 102 2e-16
>seq3589
Length=6346
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || || ||||||||||||||||| ||
Sbjct 3211 ACCACCACGGAGACGAAGCACCAAGTGCAGGGTTGACTCCTTTTGGATGTTGTAGTCTGC 3270
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||| | ||| ||||| || || || || ||||| |||| || || || || |||
Sbjct 3271 CAACGTTCTGCCGTCCTCGAGCTGCTTGCCTGCAAAAATCAGGCGCTGCTGATCGGGCGG 3330
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||||||||||| | || ||| | || || ||||| || | |||||
Sbjct 3331 GATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATCGTGTCTGACGACTCGAC 3390
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || || || ||||| || ||||||||||| ||||| ||||||||
Sbjct 3391 TTCAAGCGTAATGGTCTTGCCGGTCAAAGTCTTGACGAAGATCTGCAT 3438
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || |||| || | ||| || || |||||||||||||| ||
Sbjct 2983 ACCACCGCGGAGACGGAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 3042
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||| ||||||||||| || || || || || || |||| || || ||||| ||
Sbjct 3043 CAACGTCCGGCCATCCTCAAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGGGG 3102
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || ||| | ||||| || ||||||| || ||
Sbjct 3103 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATCGTATCCGAAGACTCCAC 3162
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || |||||||| || ||||| ||||| ||||| ||||||||
Sbjct 3163 CTCAAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 3210
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || |||| || | ||| ||| || || ||||||||||| ||
Sbjct 3439 ACCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCGGC 3498
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| || ||||| ||||| || ||||| |||||||| || || |||||| |||
Sbjct 3499 AAGGGTGCGACCGTCCTCGAGTTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 3558
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||| || || ||||| | || || | ||||| ||||| || | ||||||
Sbjct 3559 GATGCCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCGAC 3618
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|||||| ||||| ||||| || ||
Sbjct 3619 TTCGAGGGTGATGGTCTTGCCAGT 3642
Score = 143 bits (158), Expect = 6e-29
Identities = 155/204 (76%), Gaps = 1/204 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| |||||||||||||| || || || | ||| || || |||||||||||||| ||
Sbjct 3718 ACCGCCACGCAGGCGAAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 3777
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||| | ||| || | |||| ||
Sbjct 3778 GAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCT-GTCAGGGGG 3836
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | ||||| ||||| || | |||||
Sbjct 3837 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCGAC 3896
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|| || ||||| ||||| || ||
Sbjct 3897 CTCAAGGGTGATGGTCTTGCCAGT 3920
>seq2177
Length=34801
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||| ||||| || || || ||||| ||||||
Sbjct 6202 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 6143
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| |||||||| | || || | |||
Sbjct 6142 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 6083
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | || || ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct 6082 ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 6024
>seq1666
Length=59928
Score = 113 bits (124), Expect = 9e-20
Identities = 151/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 230205 GACGCTATTCC--TTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCG 230262
|||||| | || |||| ||| |||||||||| |||| |||||| | || || || |
Sbjct 55396 GACGCTCTCCCCGTTGC--TCTGCTCGGCATGAACGCTGGCCTCATGTGCCAGTACATTG 55339
Query 230263 AATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGA 230322
| || || ||||| || | | |||||||| || || |||| || ||||| | |
Sbjct 55338 AGTTTGTTGCTGACCGCCTGCTGGTGGCGCTTGGCAACAAGAAGCACTACAACTCTACCA 55279
Query 230323 ACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGC 230382
||||||||| || |||||| |||||| ||| | || || || ||||||||||| ||||
Sbjct 55278 ACCCCTTCGACTTCATGGAGAACATTTCGCTCAACGGCAAGACCAACTTCTTCGAGAAGC 55219
Query 230383 GTGTCAGCGATTATCAAAGGCCCGGTGT 230410
| || | || ||||||| | | |||||
Sbjct 55218 GCGTTGGTGACTATCAAAAGGCGGGTGT 55191
>seq2758
Length=2532
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || |||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 1690 ACCGCCGCGCAGGCGCAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 1631
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||
Sbjct 1630 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 1571
Query 282992 AATACCCTCCTTGTCT 283007
|| ||||||||||||
Sbjct 1570 GATGCCCTCCTTGTCT 1555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046662111583192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |