Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phyllosticta_20citricarpa_20[genbank_20GCA_5F001604955.1_202016-03- 31] 5,748 sequences; 31,127,197 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2177 134 3e-26 seq3589 129 1e-24 >seq2177 Length=34801 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || |||||||||||||| || ||| ||||||||| Sbjct 6024 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCGGACACCATC 6083 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || || || ||||||||||| || || Sbjct 6084 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTG 6143 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| || || | || || |||| || ||| |||| || Sbjct 6144 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 6202 >seq3589 Length=6346 Score = 129 bits (142), Expect = 1e-24 Identities = 141/186 (76%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||||||||| || ||| || ||||||||||| || ||||| Sbjct 3644 TCACTGGCAAGACCATCACCCTCGAAGTCGAATCGTCCGACACCATCGACAATGTCAAGT 3585 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||||||||| || || || ||||| || |||||||| || | ||||||||||| | Sbjct 3584 CCAAGATTCAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 3525 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || ||||| || || | || |||||||| || ||| | || || ||||| || || | Sbjct 3524 AGCAACTCGAGGACGGTCGCACCCTTGCCGACTACAACATTCAGAAGGAATCCACCCTCC 3465 Query 178123 ATCTTG 178128 | |||| Sbjct 3464 A-CTTG 3460 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| || || |||||||| || || Sbjct 3207 CAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTTGAGGTGGAGTCTTCGGAT 3148 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || ||||||||||| Sbjct 3147 ACGATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 3088 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| |||| | ||||| || ||| || Sbjct 3087 CGCCTGATTTTCGCGGGCAAGCAGCTTGAGGATGGCCGGACGTTGGCCGACTACAACATC 3028 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 3027 CAGAAGGAGTCCACTCTGCA-CTTG 3004 Score = 127 bits (140), Expect = 5e-24 Identities = 141/187 (75%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || ||| ||||||||||| |||||||| Sbjct 3922 TCACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAGT 3863 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| || || ||||| || || |||||||| || | Sbjct 3862 CCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA-CAGCAGCGTCTCATCTTCGCTGGCA 3804 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || ||||| || ||| |||| || || || || || | Sbjct 3803 AGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGCTTC 3744 Query 178123 ATCTTGT 178129 | || || Sbjct 3743 ACCTCGT 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642549711112