Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq157 363 2e-95 seq104 129 6e-25 seq416 125 7e-24 seq98 100 3e-16 >seq157 Length=447866 Score = 363 bits (402), Expect = 2e-95 Identities = 583/815 (72%), Gaps = 28/815 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 173680 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGATTGATCTC 173739 Query 116696 TCCAAGGACACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| | |||||| | ||||| ||||| Sbjct 173740 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGTTTCTTCATTTCA 173799 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| ||||||||| |||||||| ||||||||||| || |||||||| Sbjct 173800 CACGTGCTCGCCTTCTTCGCCGCCTCTGACGGCATTGTCAACGAGAACCTTGTCGAGCGC 173859 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| |||| ||||||||| | | ||||| || |||||||||||||| |||||| || Sbjct 173860 TTCAGCTC-CGAGGTGCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 173918 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCG 116929 ||||||| | ||||| || | || || |||||||||||| ||| | ||| | || Sbjct 173919 GGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAGCGACGTCCG 173978 Query 116930 -GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 || || || | || ||||||||||| | || || ||| || ||||||| Sbjct 173979 CCAGCGCCAGTACC---TCTTCAACGCCATCGACAACATTCCCTGCATCCGTAAGAAGGC 174035 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGC-AGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 || ||||| ||||| |||||| || | ||| || || |||||| | || || || | Sbjct 174036 TGACTGGGCTCTGCGATGGATCAGCGACGAGA-AGTCCACCTTCGCCTGCCGTCTCGTTG 174094 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || |||||||| ||| ||||||| || ||| |||||| | || || ||| | | Sbjct 174095 CCTTTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTTCTGGTTGA 174154 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || ||||||||| | || || || ||| ||||||||| ||||| | ||||||| Sbjct 174155 AGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 174214 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG-CG 117226 | |||| ||||| ||||| |||| ||| || | ||| | | | || | Sbjct 174215 GCATGCACACTGACTTCGCCTGCCTGCTCTTCTCACAGCTCAAGCA-CAAGCCTTCGCCT 174273 Query 117227 GCGCGCGT-CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285 | | ||| ||| | ||| ||||||| || || ||||||||||| |||||| |||| Sbjct 174274 GACCTCGTACAGAG-CATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGA 174332 Query 117286 AGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 || ||||| |||| ||||| || | || || || | |||| |||||||| ||| Sbjct 174333 CGCTCTGCCTTGTGC-CCTGCTCGGCATGAA-CGCCAACCTCATGTGCCAATACATTGAG 174390 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA---CTACAACACGCCC 117400 |||||||||||| | ||||| |||| | ||||| |||| | ||||||| | || Sbjct 174391 TTCGTCGCCGACCGTCTGCTCCTCGCAC---TCGGCAACAAGAAGTTCTACAACGCCACC 174447 Query 117401 AACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 ||||| | ||||| ||| | ||||| |||||| Sbjct 174448 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 174482 >seq104 Length=125481 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 107501 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 107560 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | | ||| || || | ||||| |||||||| ||| ||||||| || || | Sbjct 107561 GACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 107620 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||||||||||||||||||| Sbjct 107621 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 107680 Query 40879 G 40879 | Sbjct 107681 G 107681 >seq416 Length=196129 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| |||| || || | || Sbjct 78443 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 78384 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| |||||||| || |||||||| Sbjct 78383 GACACTATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 78324 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| || || || |||| ||||| |||| ||||||||| Sbjct 78323 CAGCGTCTGATCTTTGCCGGCAAGCAACTCGAGGACGGTCGCACTCTCAGTGACTACAAC 78264 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| ||||||| || || || Sbjct 78263 ATCCAAAAGGAGTCCACGCTCCACCTCGT 78235 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || ||||| |||| |||||| | | Sbjct 78215 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACTATCACACTCGAGGTCGAATCATCG 78156 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 78155 GACACCATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 78097 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || ||||| || |||| | ||| | |||||||| Sbjct 78096 ACAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAGGACGGCAGGACCTTGTCGGACTACAA 78037 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 78036 CATCCAGAAGGAGTCGACTCTTCACCTGGTG 78006 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 ||||| || ||||||||| |||| || || | | |||| | | |||| | ||| Sbjct 78647 ACGGGAAAGACCATCACCCTCGAGGTTGAGTCTTCGGACACTATCGACAACG-TGAAGAG 78589 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| || |||| ||||| || ||||||| |||||||| Sbjct 78588 CAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTCATCTTTGCGGGCAA 78529 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||| | | |||||||||||| ||||||||| |||| || || Sbjct 78528 GCAGCTTGAGGATGGTCGCACTTTGAGCGACTACAACATTCAGAAGGAGTCCACCCTCCA 78469 Query 40893 TCTAGT 40898 || || Sbjct 78468 CCTCGT 78463 >seq98 Length=448780 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| ||||||| || || | |||| ||| ||||| ||||| || Sbjct 219438 GACAAGGAGGGTATCCCCCCGGACCAACAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAG 219497 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || || ||||||||||||||||||||| |||| || || || ||| | Sbjct 219498 GACGGCCGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTGCTC 219557 Query 40903 CGCTTGAGGGGCGGCGGC 40920 ||| || | || || ||| Sbjct 219558 CGCCTGCGTGGTGGTGGC 219575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216404935840