Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq127 403 2e-107 seq157 190 2e-43 seq416 114 1e-20 >seq127 Length=55032 Score = 403 bits (446), Expect = 2e-107 Identities = 1207/1849 (65%), Gaps = 30/1849 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 |||||||| || |||||||| ||||| ||||| | |||||| | ||| || || || Sbjct 48754 GTGCGAAGGTAGTACATGCCAGTCTTAAGACCGAGCTTCCAACCAGCAAAGTGCATAGAA 48695 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | ||| | ||||| | |||| ||||| ||||||||| Sbjct 48694 GTGATCTTGCCCATGGTGGGCTCCTGCATGTGGATGTTGAGTGACTGCGATTGATCGATA 48635 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||||||||| | | | | |||| |||||||| || ||| Sbjct 48634 AAGGCACCACGGTCGGCGGCCATCTGGACGATTTGACGCTGGCTAATTTCCCAGACAGTC 48575 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||| || | |||| || ||| || ||| | ||||| ||| ||| | | Sbjct 48574 TTGTAAAGGATCTTGATGTCATCCGGGATGTTGGGGATGCGCTGGATGGAACCGCCGTCG 48515 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| || || || | ||| |||||| ||| | || | ||| |||| | Sbjct 48514 GCAATGATGCGGTTCTTCATGTTGTCGCTCCACAGGCCGCGGTCGACAAGATCCTTGAGC 48455 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGA 22503 | | |||| || || || |||||||||| ||||| | || || ||| |||||| Sbjct 48454 AACCAAGGGTTGACAACCTGGAACTCGCCGG-CAAGAACACGACGGGAGTAGATGTTGCT 48396 Query 22504 TGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCAT 22563 ||| |||| ||||| | || ||| |||| ||||| | || ||| || ||||| Sbjct 48395 GGTGTACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTAGCAGTAGGCAT 48336 Query 22564 CGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA 22623 || || | || || ||||| | | ||||||| | ||| | |||||| | Sbjct 48335 AGGAGCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGGCCTTGAGTGCCTC 48276 Query 22624 CCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCG 22683 ||||||||| ||||||||||| |||||| ||||||| ||||| || | | | || Sbjct 48275 CCAGTCCCAAAGATCGGACGGGGTCACAC---CCCACATGTCGTACTGGAGCTCACCCTT 48219 Query 22684 ACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT 22743 || ||| ||| |||| || || |||| ||| || | ||||| ||||| Sbjct 48218 GGAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCAAGATCGCAAGA 48159 Query 22744 CGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC--- 22800 || | || ||| || || ||||| ||||| | |||| | | | ||| Sbjct 48158 AGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGCTGGCGGGCCTC 48099 Query 22801 -GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGC 22859 |||||| ||| | ||||| |||| | ||| || || || | ||| || | Sbjct 48098 GGGCGAC----TCGAAAGGCATGCGCAGAGCAAGGAAGGCATCAGCGAGACCGCTCACAC 48043 Query 22860 CTATACCGATCGGTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCA 22917 | | |||||| || |||| | || || | || ||||||| | || || Sbjct 48042 CGAGACCGATAGGACGGTGTCGCATGTTG--CTGTTGCGTGCCTCGATGACGGGGTAGTG 47985 Query 22918 ATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNN 22977 || ||||| |||||||||| |||| || | | | Sbjct 47984 GTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCTCGTGAAGCTT 47925 Query 22978 NTCAAAGTCGTAAACGCCCGATTGTA----CAACAAACTTGTTGACGGCGATCGAGGCAA 23033 | |||||| || ||| || | | | ||||| | || | |||| || |||| Sbjct 47924 CTTGAAGTCG-AAGCGCTCGTTGGGAATGTCAACATAGGTGGGAAGAGCGAGAGAAGCAA 47866 Query 23034 GATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGC 23093 | ||||| ||||| ||||| || | |||||||| | || || || || | ||| Sbjct 47865 GGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCACAAGTTGG 47806 Query 23094 TACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGA 23153 | || ||||||| || |||||||||| || || ||| | ||| ||||| | Sbjct 47805 AGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCTTTGTAAA 47746 Query 23154 GCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG 23213 ||||| | || |||| ||||||||||| | ||||| ||| || ||| | |||| | Sbjct 47745 GCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCGTACCAGACCTTCTGTG 47686 Query 23214 CGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAAT 23272 || | | | ||| | || | | ||| || ||||||||| | ||||| ||| || || Sbjct 47685 CGCGGATA-GTCTCGCGACCACGGCCCTCACGCTCGTACTTCTCGTACAGCGCCTCGAAC 47627 Query 23273 TCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACAT 23331 || | ||||| ||| ||||| || ||||| | | || ||||| ||| |||| | Sbjct 47626 TCCTCGCCGTAGACA-TCGGCAAGACCGGGGCACTCGTGAGGGCACATCAGAGTCCAGTT 47568 Query 23332 TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTC 23391 || | ||| || || |||| || | || || ||||| || |||||||| || || Sbjct 47567 GCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAGAGGTC 47508 Query 23392 GCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTC 23451 || || || || || || |||||| |||||| | |||| ||| | | ||| Sbjct 47507 ACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAAGGGAATGATGTC 47448 Query 23452 CGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATC 23511 || ||||| ||||||||||| | ||||| || || || | ||| ||||| ||||| || Sbjct 47447 GGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTC 47388 Query 23512 GACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCC 23571 ||||||||| || ||||||||||| || | ||||| || |||||||||||||| | || Sbjct 47387 GACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGACCGTTGGAGGTACC 47328 Query 23572 GCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGC 23630 | | |||||| | | ||| | || |||| | |||| || || ||| || | Sbjct 47327 G-TTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAGTGTTGAGACCAATAC 47269 Query 23631 CTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGC 23690 | || | || || ||||| ||||| ||| |||||||||||||| ||||| |||| Sbjct 47268 CACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTAGATACCCTCAATGC 47209 Query 23691 TGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCG 23750 |||| || || | ||| | ||| || || | | || || | || ||| | || Sbjct 47208 TGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTGTGCCTGAGGGGTACCTGCGC 47149 Query 23751 AGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTACGTGTCG 23809 ||| || || ||| ||| || |||||||| || ||||| ||| ||||| || ||| Sbjct 47148 TGAAGAGCGTAGGGGAGGCATGTGTAAAGTACTTGTTGGACATGTAG-TTGTAGGTCTCG 47090 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 || ||||| || ||||| || ||||| ||||||| || || ||||| ||||||| || Sbjct 47089 ATCGCGGCCTCGATGTCGTCGCCGTGGATACCGACAGCAACTCGCATGATCATGTGCTGT 47030 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | ||||| || || |||||||| || | | ||| || || Sbjct 47029 GGTCTCTCGGCAACTTTGCCGTCGATGCGGAGGAGATATGAGCGCTCAAGCGTCTTGAAG 46970 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || || | ||||| ||||| || |||| || |||||||| |||| Sbjct 46969 CCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGTTCA 46921 >seq157 Length=447866 Score = 190 bits (210), Expect = 2e-43 Identities = 549/834 (66%), Gaps = 17/834 (2%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | || || | || || Sbjct 173680 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGATTGATCTC 173739 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||| ||| | | |||| || |||| | || ||| | Sbjct 173740 TCCAAGGATCTTCACGACTGGAACAAGCGTCTCAACGACGATGAGCGTTTCTTCATTTCA 173799 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || |||||||| || || || ||||| |||||||| | ||||| | Sbjct 173800 CACGTGCTCGCCTTCTTCGCCGCCTCTGACGGCATTGTCAACGAGAACCTTGTCGAGCGC 173859 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||| | | ||||| | ||||| ||||| || || | || Sbjct 173860 TTCAGCTCCGAGGTGCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATG 173919 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || | || || || |||||||| || ||| | | ||| | | Sbjct 173920 GAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAGCGACGTCCGC 173979 Query 57867 GAGAAAC-GTAGACTGTTCAACGCGATCGA-AACAATGCCCGCGATCGCCAAGAAGGCAG 57924 || | ||| || |||||||| ||||| |||| | || || ||| |||||||| | Sbjct 173980 CAGCGCCAGTAC-CTCTTCAACGCCATCGACAACATTCCCTGC-ATCCGTAAGAAGGCTG 174037 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | ||| | | |||||| | || | | |||| |||||| | || | || | Sbjct 174038 ACTGGGCTCTGCGATGGATCAGCGACGAGAAGTCCACCTTCGCCTGCCGTCTCGTTGCCT 174097 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | || ||||||||||| || ||||| || ||| || || | || || ||| |||||| Sbjct 174098 TTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTTCTGGTTGAAGA 174157 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | || ||||| ||| | || || || || ||||||| | || || || |||||||| Sbjct 174158 AGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGCA 174217 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA---ATAAACCGACGCGGG 58161 | || ||||| || || ||||| | | ||||||| ||| | || || ||| | Sbjct 174218 TGCACACTGACTTCGCCTGCCTGCTCT--TCTCACA-GCTCAAGCACAAGCCTTCGCCTG 174274 Query 58162 ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAG 58221 | | | | | ||| ||||||||||| || | ||||| | ||||| || |||| | Sbjct 174275 ACCTCGTACAGAGCATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACG 174334 Query 58222 CCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTG 58281 | || || ||| ||||||| |||||| | | |||| | ||||||||||| | Sbjct 174335 CTCTGCCTTGTGCCCTGCTCGGCATGAACGCCAACCTCATGTGCCAATACATTGAGTTCG 174394 Query 58282 TTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACAACACGAAAAATCC 58339 | |||||| | || | |||| ||| | ||| || |||||| | | || || Sbjct 174395 TCGCCGACCGTCTGCTCCTCGCACTCGGCAACAAGAAGTTC--TACAACGCCACCAACCC 174452 Query 58340 GTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 || || || ||| | ||||| || | |||||||| ||||| ||||| || Sbjct 174453 CTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAA 174506 >seq416 Length=196129 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||||| |||||||| || ||||| |||| || ||| | || Sbjct 78216 CATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACTATCACACTCGAGGTCGAATCATC 78157 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || |||||||| || | || || ||||| Sbjct 78156 GGACACCATCGACAACGTCAAGTCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 78097 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || |||||||| || ||| | || ||| | ||| || || || || Sbjct 78096 ACAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAGGACGGCAGGACCTTGTCGGACTACAA 78037 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||||||||| ||||| || Sbjct 78036 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCT 78004 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||| Sbjct 78443 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 78384 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||| | || || ||| || | | ||||||||| ||| | || || ||| Sbjct 78383 GACACTATCGACAATGTGAA---GAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGAC 78327 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || || ||||| || | || ||| | ||| | || || || Sbjct 78326 CAGCAGCGTCTGATCTTTGCCGGCAAGCAACTCGAGGACGGTCGCACTCTCAGTGACTAC 78267 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||| || || || || || || || ||| Sbjct 78266 AACATCCAAAAGGAGTCCACGCTCCACCTCGTCCTT 78231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763981717280