Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq157 120 6e-22 seq127 100 6e-16 seq46 98.7 2e-15 >seq157 Length=447866 Score = 120 bits (132), Expect = 6e-22 Identities = 259/386 (67%), Gaps = 6/386 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 174503 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 174444 Query 251623 GCATTGT---ACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 || |||| ||| |||| | ||| ||||| | || | ||||| || || ||||| Sbjct 174443 GCGTTGTAGAACTTCTTG---TTGCCGAGTGCGAGGAGCAGACGGTCGGCGACGAACTCA 174387 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAG 251739 | || || | ||| || | | ||||||||| | || |||||| | || || || Sbjct 174386 ATGTATTGGCACATGAGGTTGGCGTTCATGCCGAGCAGGGCACAAGGCAGAGCGTCGGAG 174327 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| |||| ||| ||| || ||||| | || || || | | | || Sbjct 174326 AGGAACTCCTGCTCGATGGTCACAGCCTCGGTGATGATGCTCTGTACGAGGTCAGGCGAA 174267 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 |||||| || |||| |||| | || || | | || | ||||| |||||||| Sbjct 174266 GGCTTGTGCTTGAGCTGTGAGAAGAGCAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCA 174207 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||| | ||||||||| | || |||| ||| | ||||| ||| | | |||| Sbjct 174206 CGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAG 174147 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAA 251945 ||||| | | || || |||||||| Sbjct 174146 AAGATAGAGGCGAACGAGCCAGAGAA 174121 >seq127 Length=55032 Score = 100 bits (110), Expect = 6e-16 Identities = 278/417 (67%), Gaps = 17/417 (4%) Strand=Plus/Minus Query 294094 CCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGG 294153 |||||| ||| ||||| ||| ||| | ||| | |||| ||| || ||||| | || Sbjct 47662 CCCTCACGCTCGTACTTCTCGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGA 47603 Query 294154 CCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCAT-CAGTCTCCACGCGCTTCAT 294212 || ||||||||||||||| | |||| ||| | | | | | || ||||| |||||||| Sbjct 47602 CCGGGGCACTCGTGAGGGCACATCAGAGTCCAGTTGCCGTTCTGT-TCCACACGCTTCAT 47544 Query 294213 GAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACC 294272 ||| | || || ||||| ||||| || | || || || || | |||| || Sbjct 47543 GAACAAGTCGGGGATCCACAGGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCC 47484 Query 294273 TTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACAC 294332 || || || ||| ||||||| |||||||||| || || || || || | Sbjct 47483 GTGGTTCTTGCGAAGGTCCAGGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGAT 47424 Query 294333 AGCAAAGG-AC-----CCCTTCCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGT- 294385 |||||||| || | ||| || || ||||||| | |||| || ||| ||| Sbjct 47423 AGCAAAGGCACCGGGGCGCTTGTTG---CCACCCTGGTCGACGTAACGAGCGGTGTTGTT 47367 Query 294386 -CAAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATCTCA 294444 |||||| ||||| || |||| || | ||| ||| ||||| |||| ||| | | Sbjct 47366 GTAAACAC--GAAGCATGGGAACGAGACCGTTGGAGGTACCGTTGGTGCCGCCAATGTAA 47309 Query 294445 GCCCCGCGCCCGCGAATGTCGCTCA-TGTGGAGACCAATGCCACCGCCATACTTGGA 294500 || || | |||||| || | | ||| ||||||||| ||||| | | |||||| Sbjct 47308 GCACCAGTGGCACGAATG-CGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGA 47253 >seq46 Length=166818 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 280671 ACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGA 280730 ||||| | ||||| || ||||| || ||||||||||||| || ||||| ||||| Sbjct 107164 ACCAACTTCGGTCTCGATGCCGAGCTTGTTTCTCACTCTCGCATGCGTGGTCTCTCTGGT 107223 Query 280731 GGCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACACCCTCACGTGATCGT 280789 |||||| || || | ||| | | || ||||| ||||| | |||||| ||||||| Sbjct 107224 GGCCAGCGTGTTAAGGTCGTCCTTGCCGCTTGCTCT-TGGCAGCGTCCTCACCTGATCGT 107282 Query 280790 TCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCT 280837 || |||||||| || ||||| || ||||| || ||| |||||||| Sbjct 107283 CCTTGACGAGCCCACTAACTACCTTGACCGTGACTCCCTTGGCGCTCT 107330 Score = 95.1 bits (104), Expect = 2e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||||| ||||| ||||| || ||||| || || |||| ||||| Sbjct 106608 CTCCCGTATTGCCGTCATTGGCCCCAACGGTGCTGGCAAGTCCACTCTCGTCAACGTCCT 106667 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 |||||| ||| | |||| || ||| | |||| ||||| || || || Sbjct 106668 GACTGGTGAGCTCATCCCCACCTCTGGTGACGTCTACCAGCACGAGAACATCCGTATTGC 106727 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| |||||||| ||||||| ||| | ||||| | | Sbjct 106728 CTACATCAAGCAGCACGCTTTCGCTCACATCGACCACCACCTTGACCTTACTCCCTCCGA 106787 Query 280340 ATACATTCAGTGGCG 280354 ||||| |||||||| Sbjct 106788 GTACATCCAGTGGCG 106802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831084584994