Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq157 185 2e-41 seq416 176 8e-39 seq104 129 1e-24 seq430 111 3e-19 seq46 87.8 3e-12 >seq157 Length=447866 Score = 185 bits (204), Expect = 2e-41 Identities = 573/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || |||||||||||||| || || |||||||||||||| |||||| | Sbjct 174540 CATGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 174481 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC---GCCAAACTGCTTGGGGTA 10051 ||||| ||| |||||||||||| |||||||| ||| | |||| ||| || Sbjct 174480 AAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTT---GTT 174424 Query 10052 ACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGA 10111 |||||||| || | ||||| || |||||||| ||||| |||| ||| |||| | Sbjct 174423 GCCGAGTGCGAGGAGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGC 174364 Query 10112 GTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGAC 10171 ||||||||| | || | || || | |||||| | | ||| |||| ||| ||| || Sbjct 174363 GTTCATGCCGAGCAGGGCACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCAC 174304 Query 10172 CGCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || || |||||||| ||| | |||| | || |||||| || ||||| || | Sbjct 174303 AGCCTCGGTGATGATGCTCTGTACGAGGTCAGGCGAAGGCTTGTGCTTGAGCTGTGAGAA 174244 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 || || | || | ||| | ||||||||| || ||| | ||||||||| || Sbjct 174243 GAGCAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATAAGCTCGTTGGAGAA 174184 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 ||||| | |||||| || || || || |||||| || | | |||||| || || Sbjct 174183 GGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAACGAGCCAGA 174124 Query 10352 GAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC 10408 || |||||| || || ||| | |||| ||||| || ||||||| | || Sbjct 174123 GA--AGAAGATGCCTTCGACGGCAGCAAAGGCAACGAGACGGCAGGCGAAGGTGGACTTC 174066 Query 10409 GCG-CGAAAAGTATTTCG-AG-GCCCACGCTGCCTTCTTTCCCACGGCAGGG-ATCGTCT 10464 || || | | ||| || ||||| | |||||||| | | |||||| || | | Sbjct 174065 TCGTCGCTGA-TCCATCGCAGAGCCCAGTCAGCCTTCTTACGGA-TGCAGGGAATGTTGT 174008 Query 10465 CGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTC-CTCAATAAGAGCATCAAGGAGC 10523 |||| || | |||||| | | |||| | |||| || | || | || | ||| Sbjct 174007 CGATGGCGTTGAAGAGGTACTGGCGCTGGCGGACGTCGCTGATGTAG-GTGTCGATGAGG 173949 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGT 10583 |||||||| |||| ||||| | |||| | |||| | ||||||| || Sbjct 173948 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGA 173889 Query 10584 GCC-GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCC 10642 ||| |||| || | || || | ||| | | |||||||| | || ||||| Sbjct 173888 GCCTCAGGGATCTG-CACCTCGGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCC 173830 Query 10643 ATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAG 10702 || | | || |||||| |||| | ||| |||||| |||||||| ||||| || Sbjct 173829 GTCAGAGGCGGCGAAGAAGGCGAGCACGTGTGAAATGAAGAAACGCTCATCGTCGTTGAG 173770 Query 10703 ----TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 || || |||||| | ||||| | ||| | | |||||| | ||||||| Sbjct 173769 ACGCTTGTT----CCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGA 173714 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTG 10786 | | || |||||||||||||||| || Sbjct 173713 AGGAAGCCTCGGCCTTCTTGTACATTTG 173686 >seq416 Length=196129 Score = 176 bits (194), Expect = 8e-39 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || |||||||| || | |||| ||| || || ||||| || |||||||| | Sbjct 77981 TTTACTGGCCACCGCGAAGACGGAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGT 78040 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || | ||||| || || || | |||||| || ||||| || || | ||||||| Sbjct 78041 AGTCCGACAAGGTCCTGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGTTGGT 78100 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | ||||| || || ||||||||||||||||| | ||||||| ||||||||||| | || Sbjct 78101 CTGGTGGGATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTGTCGATGGTGTCCGATG 78160 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || | ||||| || || || ||||| ||||||||||| || ||||| Sbjct 78161 ATTCGACCTCGAGTGTGATAGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 78215 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| ||||||||||| ||||||||||| || || | Sbjct 78217 CCACCGCGAAGACGAAGGACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCACTG 78276 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| ||||| || || || | || ||||| || ||| Sbjct 78277 AGAGTGCGACCGTCCTCGAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGA 78336 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||| || ||||| ||||| | || || || Sbjct 78337 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAAGACTCCACC 78396 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || ||||||||||| ||||| |||||||| Sbjct 78397 TCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 78443 >seq104 Length=125481 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | || || || | |||||| |||||||| || Sbjct 107679 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 107620 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||||| || |||||||| |||||||| || ||||| ||| || ||| Sbjct 107619 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 107560 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 107559 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 107501 >seq430 Length=48834 Score = 111 bits (122), Expect = 3e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || | ||| | | ||| ||| |||| |||||||| |||||||| || Sbjct 24309 TTCTGCTCGTAGTGCAGAATGTCTGTGCAGACTTCGTCGAGGAAGCCGGAGTCGTGAGAG 24250 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATG-AGCCATGCCACGTT 225528 || |||| ||| | | || || || |||||||| || || ||||| | ||| Sbjct 24249 ACGATGAGGGAGGTGATGTCGGTGTGGGTCTTGAGGTA-GTCCTGGAGCCACTTGATGTT 24191 Query 225529 GCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGAT 225588 | ||| || | ||||| ||||||||||| || || | || |||||| || | || Sbjct 24190 GGCGACATCGAGATGGTTGGTAGGTTCGTCGAGGAGGAAGACATCAGCACGCATCAACAT 24131 Query 225589 GGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638 |||||| | | || || |||||| ||||| || || ||||| ||||||| Sbjct 24130 GGCGCGGGCCAAAGCCAACTTCATCTTCCAACCACCAGACAGAGAGCCGA 24081 >seq46 Length=166818 Score = 87.8 bits (96), Expect = 3e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| || | | ||| | ||||| ||||| || ||||| || ||| | || | Sbjct 106032 GGTCATCTCAGTGTCAGCAGAGTCAAGATCGTGCTCGACGTAGACAGTCTTAACCTCGCT 105973 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||||||||| | ||| | || || ||||| | ||||| |||| | Sbjct 105972 CTGCTT-GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGTCTTTC 105914 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 | | ||||||||||||| ||| |||||| | | | ||||| | | ||| || Sbjct 105913 CGGAACCGTTGGGACCGAGGAGACCGTAACGCTGGCTACGCTTCAGGCGGAGAGTGGTCT 105854 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCAC 225989 ||| || || |||||| |||| ||||| | | ||| ||| | ||| || ||||||| Sbjct 105853 GGTTGAGAAGAATCTTGGCACCGTAGGCCAAGTTGAAGGTGCAGTTGCAAAGATCCTCAC 105794 Query 225990 CCTCCTC 225996 ||||||| Sbjct 105793 CCTCCTC 105787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | ||| || | ||| ||||||| || || || |||||| Sbjct 106802 CGCCACTGGATGTACTCGGAGGGAGTAAGGTCAAGGTGGTGGTCGATGTGAGCGAAAGCG 106743 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | || | || ||| || Sbjct 106742 TGCTGCTTGATGTAGGCAATACGGATGTTCTCGTGCTGGTAGAC-GTCACCAGAGGTGGG 106684 Query 225101 TGTG-CCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || ||| || || ||||| |||| ||| || | |||||| ||||| ||||||||||| Sbjct 106683 GATGAGCTCACCAGTCAGGACGTTGACGAGAGTGGACTTGCCAGCACCGTTGGGGCCAAT 106624 Query 225160 CACGCCAATCCGGGA 225174 ||| |||| ||||| Sbjct 106623 GACGGCAATACGGGA 106609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617400198480