Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq157 410 2e-109 seq127 331 2e-85 >seq157 Length=447866 Score = 410 bits (454), Expect = 2e-109 Identities = 610/853 (72%), Gaps = 14/853 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| || ||||||||||| || Sbjct 173680 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGATTGATCTC 173739 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAGTTTTTCCTCAA--- 42415 ||||||| || |||| | | |||| | |||| || |||| ||| Sbjct 173740 TCCAAGGATCTTCACGACTGGAACAAGC-GTCTCAACGACGATGAGCGTTTCTTCATTTC 173798 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | || | || |||||||||||||||||||||||||| ||||| |||||||| | | | Sbjct 173799 ACACGTGCTCGCCTTCTTCGCCGCCTCTGACGGCATTGTCAACGAGAACCTTGTCGAGCG 173858 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||||||| | |||||| ||||||||||||||||||||||| || Sbjct 173859 CTTCAGCTCCGAGGTGCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 173918 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || || || |||| |||||| || | Sbjct 173919 GGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAGCGACGTCCG 173978 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 | |||| | || ||||| ||||| || | || ||||||||| |||||||| || Sbjct 173979 CCAGCGCCAGTACCTCTTCAACGCCATCGACAACATTCCCTGCATCCGTAAGAAGGCTGA 174038 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCT 42714 |||||| || |||||| || | | || | | || |||| | | || || |||| Sbjct 174039 CTGGGCTCTGCGATGGATC-AGCGACGAGAAGTCCACCTTCGCCTGCCGTCTCGTTGCCT 174097 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 || | |||||||| |||||||||||||| ||| | |||||||| ||||||||| | ||| Sbjct 174098 TTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTTCTGGTTGAAGA 174157 Query 42775 AG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGG 42833 || || || ||| | || || |||||||| ||||| || ||| | |||||||| Sbjct 174158 AGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGC 174216 Query 42834 CTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 |||| | ||||| |||||||| || ||||| || |||| ||||||||| ||| Sbjct 174217 ATGCACACTGACTTCGCCTGCCTGCTCTTCTC---ACAGCTCAAGCACAAGCCTTCGCCT 174273 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 || | || | | ||||||||| ||||| ||| |||||| ||||||||||| | | Sbjct 174274 GACCTCGTACAGAGCATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGAC 174333 Query 42954 TCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTA 43012 | ||||| ||| ||||| ||||||||||| | ||||||||||| | ||||| ||| Sbjct 174334 GCTCTGCCTTGTG-CCCTGCTCGGCATGAACGCCAACCTCATGTGCCAATACATTGAGTT 174392 Query 43013 CGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 ||||||||||| ||| || | | || || |||||||| | | ||| Sbjct 174393 CGTCGCCGACCGTCTGCTCCTCGCACTCGGCAACAAGAAGTTCTACAACGCCACCAACCC 174452 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 ||||||||| |||||||||||||| | | |||||||||||||| ||||||||||| || Sbjct 174453 CTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 174512 Query 43133 CGCCGACTACCAG 43145 || ||| |||||| Sbjct 174513 CGGCGAGTACCAG 174525 >seq127 Length=55032 Score = 331 bits (366), Expect = 2e-85 Identities = 1006/1541 (65%), Gaps = 59/1541 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||||| ||||||| || ||| Sbjct 48446 GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGGGAGTAGATGTTGCTGGTGTACGG 48387 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| || ||||| ||||||| ||||| ||||| ||||| || | || Sbjct 48386 CTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTAGCAGTAGGCATAGGAGCAAC 48327 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCT-GAGCTCGTTCCAGTCCC 244268 || || ||| | | |||||| || | | | | || ||| | | |||||||| Sbjct 48326 GAGAAGGGAGTTGCGAAGACCGTGC-TCGGCAATCCTGGCCTTGAGTGCCTCCCAGTCCC 48268 Query 244269 ACATGCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 | | | || | |||| | ||||||||||| |||| ||| |||||| Sbjct 48267 AAAGATCGGACGGGGTC----------ACACCCCACATGTCGTACTGGAGCTCACCCTTG 48218 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 | ||||| ||| |||||||| || | || || || || | || Sbjct 48217 GAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCAAGATCGCAAGAA 48158 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | ||||| |||| |||||||||||| |||||| |||| | | |||||||| | Sbjct 48157 GCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGCTGGCGGGCCTCG 48098 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | ||| || |||| || | |||| | || || || || ||| |||| Sbjct 48097 GGCGACTCGAAAGGCATGCGCAGAGCAAGGAAGGCATCAGCGAGACCGCTCACACCGAGA 48038 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||||| || | ||||||| ||||| | || || || || |||||||| |||| | Sbjct 48037 CCGATAGGACGGTGTCGCATGTTGCTGTTGCGTGCCT-CGATGACGGGGTAGTGGTTGAC 47979 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| |||||| | ||| ||||| | ||||||| ||| ||| || || Sbjct 47978 CTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCTCGTGAAGCTTCTTGAA 47919 Query 244627 GTCGTA---CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||| | ||||| |||| ||| || ||| | | || |||| Sbjct 47918 GTCGAAGCGCTCGTTGGGA---------ATG----TCA--ACATAGGTGGGAAGAGCGAG 47874 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG--GTGTACTGGACAATCTCGGTG 244741 || |||||||| ||||| ||||| || || || ||||||| || ||||| ||| Sbjct 47873 AGAAGCAAGGTTGCACACGGCGACCTCATC--AGGTGCAGTGTACTCGATGATCTCTGTG 47816 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || | ||| || ||||||||||||| || || ||| |||| |||| || Sbjct 47815 CACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 47756 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAG 244861 || ||||| ||||||||||| |||||||||| ||| || |||||| | || |||| Sbjct 47755 TCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCGTACCAG 47696 Query 244862 AGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGG 244921 | | | || || ||| |||| | |||||| |||||| |||||| Sbjct 47695 ACCTTCTGTGCGCGGATAGTCTCGCGACCACGGCCCTCACGCTCGTACTTCTCGTACAGC 47636 Query 244922 GCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGA 244981 ||||||||||| ||| |||| ||| | || ||||||||| |||||||| ||| Sbjct 47635 GCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGCACATCAGA 47576 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 |||| | |||| | | || | || |||||| | |||||||||||| ||||| | | Sbjct 47575 GTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGGCGTAG 47516 Query 245042 AAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCA 245101 |||||||| | | | || ||| ||| |||||| | || |||| ||| | Sbjct 47515 AAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAAGGGA 47456 Query 245102 AAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCT 245161 | || |||| ||||||| ||||| | ||||| ||| | ||| ||||| ||||||||||| Sbjct 47455 ATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTTGTTGCCA 47396 Query 245162 CCCTGGTCCACCATCCTCTCGAGCGC----GTTGAAGATGCGCAGGGTAGGCACTATGCC 245217 |||||||| || | |||||| |||| | | || || | || || | || Sbjct 47395 CCCTGGTCGACG----TAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGACC 47340 Query 245218 GTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGAT 245274 ||| ||| ||||||||||| ||||| || || || | | || ||| || | Sbjct 47339 GTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAGTGTT 47280 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | | || | || || |||| ||||||||| | ||||||| | |||| ||||| Sbjct 47279 G---AGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTA 47223 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 || ||||| |||||||| |||||||| || || |||||||| | ||||| | || Sbjct 47222 GATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTGTGCCTG 47163 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAA 245454 ||| | | | | |||| || || ||| ||| || |||||||| | | || | | | Sbjct 47162 AGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTAAAGTACTTGTTGGACATGTA 47103 Query 245455 CCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCT--C 245512 ||| |||| || | || ||||||| ||||||||||| | | | ||| || | Sbjct 47102 GTTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGA--TACCGACAGCAACTCGC 47045 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCG--ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGC 245570 |||| ||||||| || ||||| | | || | | | ||| | || |||| Sbjct 47044 ATGATCATGTGCTGTGGTCTCTCGGCAACTTTGCCGTCGATGC--GGAGGAGATATGAGC 46987 Query 245571 GCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 |||| ||||||||||| || ||||| |||| |||||| Sbjct 46986 GCTCAAGCGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCG 46946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334076959840