Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq157 145 8e-30 seq416 132 5e-26 >seq157 Length=447866 Score = 145 bits (160), Expect = 8e-30 Identities = 356/527 (68%), Gaps = 17/527 (3%) Strand=Plus/Plus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-C 52376 |||| || | || ||| | || || |||||| | ||||| || |||||| || | | Sbjct 174005 TCGACAACATTCCCTGCATCCGTAAGAAGGCTGACTGGGCTCTGCGATGGATC-AGCGAC 174063 Query 52377 GACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttt 52436 || | |||| | ||| || | || ||||| || ||||| ||| | || || Sbjct 174064 GAGAAGTCCACCTTCGCCTGCCGTCTCGTTGCCTTTGCTGCCGTCGAAGGCATCTTCTTC 174123 Query 52437 tCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACG 52496 || ||| || ||| | ||||| | | || | | ||| | ||| | || || || Sbjct 174124 TCTGGCTCGTTCGCCTCTATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACC 174183 Query 52497 TTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---C 52553 ||| ||||||| | || || || ||||| || ||||||| ||||| || ||||| | Sbjct 174184 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGCATGCACACTGACTTCGCCTGCCTGCTC 174243 Query 52554 TACT-ACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612 | || ||| | || || || || | | ||| | | |||||| ||| Sbjct 174244 TTCTCACAGCTCAAGC---AC--AAGCCTTCGCCT--GACCTCGTACAGAGCATCATCAC 174296 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 ||||| ||| | ||||| ||||||| | | | ||| ||||| | ||||| || Sbjct 174297 CGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGCTCTGCCTTGTGCCCTGCTCGG 174356 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGT-GC 52731 ||||||||| | ||||||| | ||||| ||||| || || || |||||| | | || Sbjct 174357 CATGAACGCCAACCTCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCCTCGC 174416 Query 52732 AGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 | ||||| || | | |||| || |||||| ||| || || || || ||| | ||||| Sbjct 174417 A-CTCGG-CAACAAGAAGTTCTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATC 174474 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || |||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 174475 TCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGCGAGTA 174521 >seq416 Length=196129 Score = 132 bits (146), Expect = 5e-26 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || | ||| || |||||||||||| || |||| | Sbjct 78250 GACTCCTTTTGGATGTTGTAGTCACTGAGAGTGCGACCGTCCTCGAGTTGCTTGCCGGCA 78309 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| ||||||||||| || || || ||||| ||| || | || | Sbjct 78310 AAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACA 78369 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||||||||||| || | || || ||||| || || || Sbjct 78370 TTG-TCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTT 78428 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 78429 CACGAAGATCTGCAT 78443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || | ||||||||| || ||||| | Sbjct 78022 GACTCCTTCTGGATGTTGTAGTCCGACAAGGTCCTGCCGTCCTCGAGCTGCTTACCAGCG 78081 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||||||||| || || ||||| || ||||| ||| | || | || | Sbjct 78082 AAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTC-TTGAATCTTGGACTTGAC 78140 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | || || ||||||| || | || || || || ||||| | Sbjct 78141 GTTG-TCGATGGTGTCCGATGATTCGACCTCGAGTGTGATAGTCTTGCCTGTGAGAGTCT 78199 Query 138599 TTACAAAAATCTGCATG 138615 | || || || |||||| Sbjct 78200 TGACGAAGATTTGCATG 78216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||||||| ||| || ||||| || || || || | | Sbjct 78478 GACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCCTCAAGCTGCTTGCCCGCA 78537 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 |||| || ||||| || |||||||| || || || ||||| Sbjct 78538 AAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 78578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259707776480