Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq157 113 4e-20 seq416 104 2e-17 seq127 86.0 6e-12 seq104 84.2 2e-11 >seq157 Length=447866 Score = 113 bits (124), Expect = 4e-20 Identities = 287/428 (67%), Gaps = 19/428 (4%) Strand=Plus/Plus Query 47159 CGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGG 47218 |||||| ||| |||||||||| ||| || || | || || | |||| | || Sbjct 174105 CGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTTCTGGTTGAAGAAGCGTGG 174164 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | ||| | || || || || ||||||||| ||||| | ||||| ||| ||||||| Sbjct 174165 CCTCATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGCATGCACAC 174224 Query 47279 CAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG--TTGGACGTGCCCACC 47336 |||| ||||| || || | ||| || || | || ||| || | | || || | Sbjct 174225 TGACTTCGCCTGCCTGCTCTTCT-CAC-AGC-TCAAGCACAAGCCTTCGCC-TGACCTCG 174280 Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 ||| | ||| | |||| || || |||| ||| |||||| || |||| |||||| Sbjct 174281 TACAGAG-CATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGCTCTG 174339 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | | | || |||||||| | | ||| | | ||||| || || |||||| Sbjct 174340 CCTTGTGCCCTGCTCGGCATGAACGCCAACCTCATGTGCCAATACATTGAGTTCGTCGCC 174399 Query 47457 GACCGCCTGCTCGT-----TCAGCTA-AAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 ||||| |||||| | || || | ||| ||| | ||| || || || || Sbjct 174400 GACCGTCTGCTCCTCGCACTCGGCAACAAG------AAGTTCTACAACGCCACCAACCCC 174453 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||| || ||| | ||||| || || | |||||||||||||| ||||||||||| ||| Sbjct 174454 TTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTC 174513 Query 47571 GGCGAATA 47578 ||||| || Sbjct 174514 GGCGAGTA 174521 >seq416 Length=196129 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | || | ||| ||||| ||||| || ||||| || | Sbjct 78217 CCACCGCGAAGACGAAGGACGAGGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCACTG 78276 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || || || || || || |||||| |||||||| || ||||| Sbjct 78277 AGAGTGCGACCGTCCTCGAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGA 78336 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | | ||| || Sbjct 78337 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCGATAGTGTCGGAAGACTCCACC 78396 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| || || || || || || |||||||| Sbjct 78397 TCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 78443 Score = 104 bits (114), Expect = 2e-17 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| |||| || |||||| ||| || ||||| || || Sbjct 78475 GTGGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCCTCAAGCTGCTTGCCC 78534 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| ||||| ||||||||||||||| ||| || ||| Sbjct 78535 GCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTC 78594 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 | |||| |||| ||||||| | ||| || |||| ||| Sbjct 78595 ACGTTG-TCGATAGTGTCCGAAGACTCAACCTCGAGGGT 78632 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | || ||||| || || || ||||| || | Sbjct 77989 CCACCGCGAAGACGGAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAC 78048 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | || || ||||| || |||||| |||| | ||||| || || || || Sbjct 78049 AAGGTCCTGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGTTGGTCTGGTGGG 78108 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || || ||||| |||| |||| |||||||| ||||| Sbjct 78109 ATACCCTCCTTGTCTTGAATCTTGGACTTGACGTTG-TCGATGGTGTCCGATGATTCGAC 78167 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || ||||| || ||||| || || || || |||||| Sbjct 78168 CTCGAGTGTGATAGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 78216 >seq127 Length=55032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| ||||| ||||||||||| ||||| || | || | |||||||||| ||| Sbjct 48447 GGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGGGAGTAGATGTTGCTGGTGTACG 48388 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||||||| |||||||| || | ||||||| || |||| |||||||| Sbjct 48387 GCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTAGCAGTAGGCAT 48336 >seq104 Length=125481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 107679 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 107620 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || ||||| || || || || ||||||||||||||| ||| || ||| | | ||| Sbjct 107619 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCG 107560 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | |||||| | |||||| |||| ||| | || ||||| ||||| || || || || Sbjct 107559 ATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 107501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498220408160