Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq127 168 8e-37 seq157 140 4e-28 >seq127 Length=55032 Score = 168 bits (186), Expect = 8e-37 Identities = 883/1396 (63%), Gaps = 35/1396 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| |||||||| ||| |||| ||| || | ||| Sbjct 48406 TAGATGTTGCTGGTGTACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTA 48347 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| || || | ||||||| |||||| ||||| | | ||| | || Sbjct 48346 GCAGTAGGCATAGGAGCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGGCC 48287 Query 116023 TTGAGGGCGTCCCAGTCGTAG---TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 ||||| || |||||||| | | | | ||| | ||| ||||| || ||||| Sbjct 48286 TTGAGTGCCTCCCAGTCCCAAAGATCGGACGGGGTCACACCC---CACATGTCGTACTGG 48230 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 || ||| | ||| || || || || | | |||||||| | || ||| || Sbjct 48229 AGCTCACCCTTGGAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCA 48170 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT- 116198 | ||| | || ||||| ||||| || || |||||||| || | || | Sbjct 48169 AGATCGCAAGAAGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGC 48110 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGAC 116257 || | ||||||| || || || | | || || | || || |||| ||||||| Sbjct 48109 TGGCG-GGCCTCGGGCGACTCGAAAGGCATGCG-CAGAGCAAGGAAGGCATCAGCGAGAC 48052 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCA--- 116314 | |||||||| || || || || |||| ||| || || || || ||| | Sbjct 48051 CGCTCACACCGAGACCGATAGGACGGTGTCGCATGTTGCTGTTGCGTGC---CTCGATGA 47995 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 |||| || || |||||| | | || | || |||||||| |||| || | Sbjct 47994 CGGGGTAGTGGTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCT 47935 Query 116375 CATGAAGCTTTTCGTAATCAAAAC------TGCGAGTCTCTTCATTGACATACTTAGGAA 116428 | |||||||| | | | || || | || || | || ||||| | |||| Sbjct 47934 CGTGAAGCTTCTTGAAGTCGAAGCGCTCGTTGGGAATGTCA------ACATAGGTGGGAA 47881 Query 116429 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 116488 | |||| || || || || ||||| | | |||||| |||||||||| || || | Sbjct 47880 GAGCGAGAGAAGCAAGGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGATCT 47821 Query 116489 CCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 116548 | || ||||| || || || ||||||||||| |||||| || || ||| ||| Sbjct 47820 CTGTGCACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGG 47761 Query 116549 ACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 116608 ||||| ||||| ||||| | || | || ||||| || | || ||| || || | Sbjct 47760 CAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCGT 47701 Query 116609 TCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| || | || | | ||| || | || ||||| ||||||||| || Sbjct 47700 ACCAGACCTTCTGTGCGCGGATAGTCTCGCGACCACGGCCCTCACGCTCGTACTTCTCGT 47641 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 | || ||||| ||||| || || | || | || || || || | || || | Sbjct 47640 ACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGCACA 47581 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 |||| ||| | || || || || ||||||||||| | ||| |||||||| || | Sbjct 47580 TCAGAGTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGG 47521 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | ||||||| || ||| || ||||||| | || || || || | |||| | Sbjct 47520 CGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 47461 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 || ||||| || |||||||| || || ||||| | || | | || ||| Sbjct 47460 AGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTTGT 47401 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 ||| |||||| || || | || || ||| | || |||||||| |||| || || Sbjct 47400 TGCCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGAC 47341 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATCGTGGATG 117024 | | || || || || || | ||| || || | |||| | | ||| || Sbjct 47340 CGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAG-TGGCACGAATGCGGTGAGTG 47282 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | | ||||||||| || || ||| ||||| ||||| ||||| || ||||| Sbjct 47281 TTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTAG 47222 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || || || |||| |||| | |||| ||||||||| || | |||| | Sbjct 47221 ATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTGTGCCTGA 47162 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTT 117203 || ||||| ||| ||||||| || || | || || | || ||| | | |||||| | Sbjct 47161 GGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGT-AAAGTACTTGTTGGACATGTA 47103 Query 117204 ATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCAT 117263 | ||||||||| | | | ||||| || ||||| ||||||| | || ||||| Sbjct 47102 GTTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGATACCGACAGCAACTCGCAT 47043 Query 117264 AAACATGTATTGGGGT 117279 | ||||| || ||| Sbjct 47042 GATCATGTGCTGTGGT 47027 >seq157 Length=447866 Score = 140 bits (154), Expect = 4e-28 Identities = 310/458 (68%), Gaps = 18/458 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 174522 GTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 174463 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | ||| | | |||||| || | | | ||| Sbjct 174462 GAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTG----CCGAGTGCGAG-GAGC 174408 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||||||||| | |||| | | |||||| |||| ||| Sbjct 174407 AGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCGAGCAGG 174348 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || ||||| ||| |||| ||| ||| ||| |||||| || | |||| Sbjct 174347 GCACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCACAGCCTCGGTGATGATG 174288 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCA--CAG-C 127521 || | ||| | ||| || ||| | | | | |||||| || ||| | Sbjct 174287 CTCTGTACGAGGTCAGGCGAAGG-CTTGTGCTTGAGCTGTGAGAAGAG---CAGGCAGGC 174232 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| | ||||||||||| ||||| || || || |||||| ||||| | Sbjct 174231 GAAGTCAGTGTGCATGCCCTCGTCACGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGC 174172 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 |||||| || ||||||||||||||||| || | || ||||||||||||||||| || Sbjct 174171 CATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAACGAGCCAGAGAAGAAGATGCC 174112 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || || |||| ||||| ||| |||| Sbjct 174111 TTCGACGGCAGCAAAGGCAACGAGACGGCAGGCGAAGG 174074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503871723440