Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq127 132 8e-26 >seq127 Length=55032 Score = 132 bits (146), Expect = 8e-26 Identities = 418/637 (66%), Gaps = 8/637 (1%) Strand=Plus/Minus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| || |||||||||| | || || ||||| || || || || || || Sbjct 47654 CTCGTACTTCTCGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCA 47595 Query 205120 TTTTTTGGGACACATCAGAGACCACAT-CTGATCGTCTTTCACCCTCTCCATAAACAGGT 205178 | | || |||||||||| ||| | | | || | || ||| | || ||| |||| || Sbjct 47594 CTCGTGAGGGCACATCAGAGTCCAGTTGCCGTTC-TGTTCCACACGCTTCATGAACAAGT 47536 Query 205179 CGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCT 205238 || |||||||||| |||| || || ||||| || | | | | || | || |||||| Sbjct 47535 CGGGGATCCACAGGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCT 47476 Query 205239 TTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 | | |||||| | | |||||||||||||| ||||| | | | || | | Sbjct 47475 TGCGAAGGTCCAGGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGG 47416 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || || | |||||| ||||||||||| || |||| | |||| |||| || | Sbjct 47415 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAA 47356 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 |||| || || |||||||||| ||| ||||| |||| | ||| | || || | Sbjct 47355 GCATGGGAACGAGACCGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCAC 47296 Query 205419 TCACGTTGGAGATGGCCGCG-CCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCT 205477 | | || || | | | ||||| || |||| ||||| |||| |||||| | Sbjct 47295 GAATG-CGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATT 47237 Query 205478 TGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC-ACCAGATAGCACGA 205536 | |||||| |||||| || | ||| || ||| || |||| | || |||| || Sbjct 47236 TTGAGAGTGTCGTAGATACCCTCAATGCTGTCATCCTTCA-TGTCGATAAGGAAGCAGGA 47178 Query 205537 AGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGC 205595 || |||| || | || ||| || ||| ||||||||| ||| ||| || | ||| Sbjct 47177 CGCAAGCTGTGCCTGAG-GGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTAAAGT 47119 Query 205596 GCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATAC 205655 ||| | | || | |||||||||| | | || ||| | ||| |||||| |||| Sbjct 47118 ACTTGTTGGACATGTAGTTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGATAC 47059 Query 205656 CTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | || | | ||||| | ||| || |||||||| Sbjct 47058 CGACAGCAACTCGCATGATCATGTGCTGTGGTCTCTC 47022 Score = 102 bits (112), Expect = 1e-16 Identities = 427/658 (65%), Gaps = 16/658 (2%) Strand=Plus/Minus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||| ||||| || || || ||| || | |||||| |||| | Sbjct 48748 AGGTAGTACATGCCAGTCTTAAGACCGAGCTTCCAACCAGCAAAGTGCATAGAAGTGATC 48689 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| || | |||| || |||||| ||||| || ||||| ||| ||||| |||||| Sbjct 48688 TTGCCCATGGTGGGCTCCTGCATGTGGATGTTGAGTGACTGCGATTGATCGAT-AAAGGC 48630 Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 || || || |||||||| | || || ||| ||| ||||| || |||||| | Sbjct 48629 ACCACGGTCGGCGGCCATCTGGACGATTTGACGCTGGCTAATTTCCCAGACAGTCTTGTA 48570 Query 204064 CACG-TCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCC 204121 | | ||| || ||| | || | | | | | ||| || || ||| |||||| Sbjct 48569 AAGGATCT-TGATGTCATCCGGGATGT-TGGGGATGCGCTGGATGGAACCGCCGTCGGCA 48512 Query 204122 ATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGG 204181 || | | || || | | || | ||||| ||| || || ||| | || Sbjct 48511 ATGATGCGGTTCTTCATGTTGTCGCTCCACAGGCCGCGGTCGACAAGATCCTTGAGCAAC 48452 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 ||||||| | ||| || || |||| || || | |||| | | | |||| ||||| Sbjct 48451 CAAGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGGGAGTAGATGTTGCTGGTG 48392 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 | || ||||| ||||||| ||| | ||||| | ||||| || || ||||| ||| Sbjct 48391 TACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTAGCAGTAGGCATAGGA 48332 Query 204302 GCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAG 204361 || | ||| ||||||||||| | ||||| | | |||| ||| || | |||| Sbjct 48331 GCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGGCCTTGAGTGCCTCCCAG 48272 Query 204362 T--CGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGAT--GCCTTGACT 204417 | | |||| || ||| |||| |||||||||||| |||| || | ||||| Sbjct 48271 TCCCAAAGATCGGACGGGG--TCACACCCCACATGTCGTACTG-GAGCTCACCCTTG-GA 48216 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 | | ||| ||| ||| ||| ||| | | || || || || | ||| || || Sbjct 48215 GGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCAAGATCGCAAGAAGC 48156 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC 204534 | | ||| | ||| ||||||||||||||||| | | || | ||||| |||||| Sbjct 48155 AGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATG-TTGAGCTGGCGGGCCTC 48099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150886283040