Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq104 141 1e-28 seq416 125 8e-24 seq98 96.9 4e-15 >seq104 Length=125481 Score = 141 bits (156), Expect = 1e-28 Identities = 146/190 (77%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| | Sbjct 107681 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 107622 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||| ||||| | || | || |||||||||| |||||| |||| | | Sbjct 107621 TCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATTGT 107562 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || ||||| | Sbjct 107561 CGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 107502 Query 46584 AGAT-TTGCA 46592 || | ||||| Sbjct 107501 AGCTGTTGCA 107492 >seq416 Length=196129 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| |||||||| |||| ||||| ||||||||||| || Sbjct 78252 CTCCTTTTGGATGTTGTAGTCACTGAGAGTGCGACCGTCCTCGAGTTGCTTGCCGGCAAA 78311 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || |||||||||| |||||| |||| | | Sbjct 78312 GATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCACATT 78371 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || ||||| || | ||||| || ||||| || || || || || Sbjct 78372 GTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTCAC 78431 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 78432 GAAGATCTGCAT 78443 Score = 102 bits (112), Expect = 9e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| | ||| || | | ||| | |||||| || | || |||||| ||||| ||||| Sbjct 77982 TTACTGGCCACCGCGAAGACGGAGCACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTA 78041 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || | || | |||| ||||||||||| || ||||| || | |||||| ||||| Sbjct 78042 GTCCGACAAGGTCCTGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGGCGCTGTTGGTC 78101 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCG 46538 | || | | ||||||||| ||||| ||||| ||| | | | ||||| | Sbjct 78102 TGGTGGGATACCCTCCTTGTCTTGAATCTTGGACTTGA-CGTTGTCGATGGTGTCCGATG 78160 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || | ||||| || ||||| || || || || || ||||||||||| Sbjct 78161 ATTCGACCTCGAGTGTGATAGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 78215 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||| | |||||| | || || ||||||||||| || || Sbjct 78480 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCATCCTCAAGCTGCTTGCCCGCAAA 78539 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||| |||| | ||| Sbjct 78540 GATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 78598 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||||| || || || || | |||||||| || ||||| Sbjct 78599 TGTCGATAGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGT 78647 >seq98 Length=448780 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| || ||||||||||| ||||| Sbjct 219536 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGGCCGTCCTCAAGCTGCTTGCCAGCGAA 219477 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| | || | | ||||||||| ||| Sbjct 219476 GATCAAGCGCTGTTGGTCCGGGGGGATACCCTCCTTGTCTATG 219434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235333581680