Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq157 313 2e-80 seq104 131 2e-25 seq416 118 1e-21 >seq157 Length=447866 Score = 313 bits (346), Expect = 2e-80 Identities = 596/863 (69%), Gaps = 25/863 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 174540 CATGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCC 174481 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAG---TGCTTGGTGCC 132707 | ||| ||| | ||| || || |||||||||| | ||||||| | |||| |||| Sbjct 174480 AAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCC 174421 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || | ||| |||||| | |||||| |||||||| |||||||| ||||| | || || Sbjct 174420 GA---GTGCGAGGAGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGC 174364 Query 132767 AATTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | | | || ||||| |||| ||||| || |||| ||| || |||||||||| Sbjct 174363 GTTCATG-CCGAGCAGG-GCACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTC 174306 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || || ||||||| ||| | ||| | | | ||| ||| | || | Sbjct 174305 ACAGCCTCGGTGATGATGCTCTGTACGAGGTCAGGCGAAGGCTTGTGCTTGAGCTGTGAG 174246 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 || | || ||| || ||||| |||| ||||||||| | || || || |||||| | Sbjct 174245 AAGAGCAGGCAGGCGAAGTCAGTGTGCATGCCCTCGTCACGAGAGATAAGCTCGTTGGAG 174186 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | || | ||||||||| || || || | ||| || || | |||||| ||| Sbjct 174185 AAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAACGAGCCA 174126 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTTC 133064 || ||||||| ||| |||||||| || || || || || || | |||| |||| |||| Sbjct 174125 GAGAAGAAGATGCCTTCGACGGCAGCAAAGGCAACGAGACGGCAGGCGAAGGTGGACTTC 174066 Query 133065 T--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | |||| ||||| ||||| ||||| || ||||| | || ||| || || | Sbjct 174065 TCGTCGCTG---ATCCATCGCAGAGCCCAGTCAGCCTTCTTACGGATGCAGGGAATGTTG 174009 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 ||||||||||| || | | | | | || || ||| | |||||||||||||| Sbjct 174008 TCGATGGCGTTGAAGAG--GTACTGGCGCTGGCGGACGTCGCTGATGTAGGTGTCGATGA 173951 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 || || || | || ||||| | ||||||||| ||| || |||||||| ||||| | Sbjct 173950 GGAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGC 173891 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATG 133299 | ||||| | |||||| || |||| ||| |||||||| || || |||||||| ||| Sbjct 173890 GAGCCTCAGGGATCTGCACCTC-GGAGCTGAAGCGCTCGACAAGGTTCTCGTTGACAATG 173832 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||| ||||||||| ||||| |||||||| ||||| ||||| | |||||| Sbjct 173831 CCGTCAGAGGCGGCGAAGAAGGCGAGCACGTGTGAAATGAAGAAACGCTCATCGTCGTTG 173772 Query 133360 AAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 | ||| | ||||||| | |||||||| || || | |||||| | ||||| || Sbjct 173771 AGACGCTTGTTCCAGTCGTGAAGATCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAG 173712 Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439 || |||||||| || |||||||| Sbjct 173711 GAAGCCTCGGCCTTCTTGTACAT 173689 >seq104 Length=125481 Score = 131 bits (144), Expect = 2e-25 Identities = 141/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 107501 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATC 107560 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | || | | |||| || |||| ||||| ||||| |||||| | ||||||||||| Sbjct 107561 GACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCT 107618 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| | Sbjct 107619 TGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGA 107678 Query 38431 AGG 38433 ||| Sbjct 107679 AGG 107681 >seq416 Length=196129 Score = 118 bits (130), Expect = 1e-21 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || |||||| |||| || ||| | || Sbjct 78443 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACTATCACCCTCGAGGTGGAGTCTTCC 78384 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | | |||| || |||| ||||| ||||| ||||| | |||| Sbjct 78383 GACACTATCGACAATG--TGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 78326 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| || || || |||| ||||| |||| ||||||| Sbjct 78325 AGCAGCGTCTGATCTTTGCCGGCAAGCAACTCGAGGACGGTCGCACTCTCAGTGACTACA 78266 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | ||||| || | || || ||| Sbjct 78265 ACATCCAAAAGGAGTCCACGCTCCACCTCGTCCTTCGT 78228 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| || ||||| |||| ||||| | | Sbjct 78215 ATGCAAATCTTCGTCAAGACTCTCACAGGCAAGACTATCACACTCGAGGTCGAATCATCG 78156 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||| ||||| || || | ||||| Sbjct 78155 GACACCATCGACAACG-TCAAGTCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 78097 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| || || ||||| || |||| | ||| | |||||||| Sbjct 78096 ACAGCGCCTTATCTTCGCTGGTAAGCAGCTCGAGGACGGCAGGACCTTGTCGGACTACAA 78037 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| |||| || || ||||||| ||| | | || |||| Sbjct 78036 CATCCAGAAGGAGTCGACTCTTCACCTGGTGCTCCGTCTTCGCGGTGGCC 77987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 ||||| || ||||||||| |||| || ||| | | |||| | | |||| | |||| Sbjct 78647 ACGGGAAAGACCATCACCCTCGAGGTTGAGTCTTCGGACACTATCGACAACG--TGAAGA 78590 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| ||||| | || || ||||| ||||| | ||||||| Sbjct 78589 GCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAGCGCCTCATCTTTGCGGGCA 78530 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | ||||| | | |||||||||||| || ||||| Sbjct 78529 AGCAGCTTGAGGATGGTCGCACTTTGAGCGACTACAACATTCAGAAGGA 78481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170086562560