Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq127 224 1e-53 seq214 136 5e-27 seq426 104 3e-17 >seq127 Length=55032 Score = 224 bits (248), Expect = 1e-53 Identities = 1118/1755 (64%), Gaps = 59/1755 (3%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| | |||||| || ||||| || || || ||||| |||||| | | ||| Sbjct 48760 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTAAGACCGAGCTTCCAACCAGCAAAGTGC 48701 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || |||| || ||| | || || || ||| | ||| | ||||| || ||| Sbjct 48700 ATAGAAGTGATCTTGCCCATGGTGGGCTCCTGCATGTGGATGTTGAGTGACTGCGATTGA 48641 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGAT---ACACTTTTGGCTAATTTCC 109575 ||||| || |||||| || || ||||| | || ||| || || ||||||||||| Sbjct 48640 TCGATAAAGGCACCACGGTCGGCGGCCATCTGGACGATTTGACGCT---GGCTAATTTCC 48584 Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 |||||||||||||| | ||||||| ||||| || |||| |||| || || || Sbjct 48583 CAGACAGTCTTGTAAAGGATCTTGATGTCATCCGGGATGTTGGGGATGCGCTGGATGGAA 48524 Query 109636 CCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGA-CCAGAGACCGACCTTTTTGAG 109694 || || | | ||| | | |||||| | | ||| ||| || ||| | || Sbjct 48523 CCGCCGTCGGCAATGATGCGGTTCTTCATGT-TGTCGCTCCACAGGCCGCGGTCGACAAG 48465 Query 109695 ATCGT----CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGA 109750 ||| | |||| | | | |||||| || || || || ||||| || ||| Sbjct 48464 ATCCTTGAGCAACCA-AGG---GTTGACAACCTGGAACTCGCCGGCAAGAACACGACGGG 48409 Query 109751 GGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGG 109810 ||||||||| | ||||| || ||||| ||||| ||| ||| | ||| || | |||| Sbjct 48408 AGTAGATGTTGCTGGTGTACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGC 48349 Query 109811 AAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT--TCGTCTTTACCCG 109868 ||| || ||||| ||||| | |||||| ||| || ||||| | ||| | | | | Sbjct 48348 TAGCAGTAGGCATAGGAGCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGG 48289 Query 109869 CTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATC 109928 | | | | ||| ||||| || || || | | ||| |||| |||||| || Sbjct 48288 C-CTTG-AGTGCCTCCCAGTCCCAAAGATCGG---ACGGGGTCACACC---CCACATGTC 48237 Query 109929 TGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAAC 109988 || || |||||| | || || || || | | |||| |||| || Sbjct 48236 GTACTGGAGCTCACCCTTGGAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTT 48177 Query 109989 CTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGC 110048 ||| || | ||| | ||||| || || || || || || |||||||| || || Sbjct 48176 CTCAGCAAGATCGCAAGAAGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGAT 48117 Query 110049 ATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCG 110107 || | |||| | ||| | ||||| || | | || || || || |||| | Sbjct 48116 GTTGAGCTGGCGGGCCTCGGGCGACTCGAAAGGCATGCG-CAGAGCAAGGAAGGCATCAG 48058 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | ||||| ||||||||||| || || || || |||||| | || || Sbjct 48057 CGAGACCGCTCACACCGAGACCGATAGGACGGTGTCGCATGTTGCTGTTGCGTGCCTCGA 47998 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 |||||||| |||| ||||| | || | ||||| || || || || Sbjct 47997 TGACGGGGTAGTGGTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGA 47938 Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTT---ATTG---ACATATTTGG 110281 || || || || | | | ||||| || ||| || | || ||||| ||| Sbjct 47937 CCTCGTGAAGCTTCTTGAAGTCGAAG-----CG-CTCGTTGGGAATGTCAACATAGGTGG 47884 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 | ||||| | ||| ||||| |||||||| | ||| || | ||||| || | | Sbjct 47883 GAAGAGCGAGAGAAGCAAGGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGA 47824 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 | || || ||||||||||| || |||| |||| ||||||||| || ||| || Sbjct 47823 TCTCTGTGCACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGT 47764 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 || ||||| || || |||||| | ||| | || || || ||| | || ||| |||| Sbjct 47763 TGGCAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGG 47704 Query 110462 CCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGG 110521 | | ||| || | ||| ||| ||| || | | | || || ||||||||| Sbjct 47703 CGTACCAGACCTTCTGTGCGCGGATAGTCTCGCGACCACGGCCCTCACGCTCGTACTTCT 47644 Query 110522 TGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGAC 110581 ||||| |||| || |||| ||||| ||||| | |||||| || || || | Sbjct 47643 CGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGC 47584 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | | || | ||| || || || || || | ||||||||||| ||| || ||||||| Sbjct 47583 ACATCAGAGTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACA 47524 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCA 110701 || |||| |||||||| ||| | ||||| | || ||||| ||| || |||| Sbjct 47523 GGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCA 47464 Query 110702 AAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------CT 110755 ||| ||||| || | ||||||||| ||||| |||| ||| | || || || Sbjct 47463 GGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCT 47404 Query 110756 TACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | | | || |||||| || || || || ||| ||| | || | ||||| |||| Sbjct 47403 T--GTTG-CCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAA 47347 Query 110816 TAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCG 110874 | || | ||| ||| || || || | ||| | | || | ||||||||||| | Sbjct 47346 CGAGACCGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCAC-CAGTGGCACGAATGCGG 47288 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTG 110932 || | | | |||||||||||| || ||| || | | ||| | | || ||||| Sbjct 47287 TGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTG 47228 Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992 | | || ||||| ||||| || |||| || | || || ||||| || | | || Sbjct 47227 T--CGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCT 47170 Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-- 111050 | | |||| || || || ||||||| ||||| | ||||| || | || |||| Sbjct 47169 GTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATG--TGTAAAGTACTTGTT 47112 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 |||||| | |||||| || |||| |||| | || | ||||| ||||| | || Sbjct 47111 GGACATGTAGTTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGATACCGACAGC 47052 Query 111111 AACTCGCATGAACAT 111125 ||||||||||| ||| Sbjct 47051 AACTCGCATGATCAT 47037 >seq214 Length=46841 Score = 136 bits (150), Expect = 5e-27 Identities = 231/330 (70%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 11670 CTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC 11729 |||||| || | ||| |||||||| || ||||| | |||||| || ||| | ||| Sbjct 5838 CTTCTTTCCAATAGCATCAATCTCGTCAATGAAGATGATACAAGGCGTGTTTTTTCTTGC 5779 Query 11730 CTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 | | |||| || || ||||| | | |||||||| ||||||||||| ||||| | Sbjct 5778 GTTTGCGAAGAGATCGCGTACTCTTGAAGGACCAACACCGACGAACATCTCCACGAACTC 5719 Query 11790 TGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | |||| |||||||| ||| || || || |||||||| | ||| ||||| | Sbjct 5718 AGATCCAGAGACACTGAA-GAAAGGCACGCCGGATTCACCAGCAGTAGCTTTGGCGAGAA 5660 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-- 11906 | |||||||| |||||||| | |||| || | |||||||| ||||||||||| || Sbjct 5659 GGGTCTTACCAGTACCAGGAGGACCACTCAGGACAGCGCCACGAGGGATCTTGGCTCCGA 5600 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTT 11966 |||| | | | | |||||| ||||||||| |||| |||| || ||| |||| Sbjct 5599 GCTTC--TGGAATCTCGCAGGCTCCTTGAGGAAAGAAACAAACTCCATAATCTCCACCTT 5542 Query 11967 GGCGGAGTCGATACCCTCAACATCGGTGAA 11996 || ||| || || |||| ||| |||| Sbjct 5541 CGCCTCGTCCATGCCAGCAACGTCGCTGAA 5512 >seq426 Length=398282 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 11735 CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 |||| || || || || |||||||| |||||||| ||| | | ||| |||| | | | Sbjct 126295 CGAAGAGCTCGCGCACGCGCTTCGCACCAACACCAACGTAGACCTCGTCGAATTCAGAGC 126236 Query 11795 CAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 |||| | | |||||| || | || ||| ||||||| || ||||| |||||||| | Sbjct 126235 CAGACATGTAGAAGAAGGGCACCTGAGCCTCGCCAGCGACAGCACGAGCCAGGAGAGTTT 126176 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAA 11914 |||| ||||| || | |||||||| | | || ||| |||||| | ||| | Sbjct 126175 TACCGGTACCGGGAGGGCCAGCGAGCAACACACCCTTGGGCATCTTGCCTCCAAGTGTGC 126116 Query 11915 AGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | ||| ||| || ||| | ||| || |||| ||| | |||||||||||||| Sbjct 126115 TGAAGCTCTCGGGAGCCTTCAAGAATTCAACAAGCTCTTGCAGTTCCTCCTTGGC 126061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972804805200