Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq127 277 3e-69 seq157 232 1e-55 >seq127 Length=55032 Score = 277 bits (306), Expect = 3e-69 Identities = 958/1476 (65%), Gaps = 59/1476 (4%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| || |||||||||||||||||||||||||||||| ||||||| Sbjct 48165 CGCAAGAAGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGCTGGC 48106 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTA 221525 ||||||||| || ||| ||||| ||||| | ||| | || || || || | Sbjct 48105 GGGCCTCGGGCGACTCGAAAGGCATGCGCAGAGCAAGGAAGGCATCAGCGAGACCGCTCA 48046 Query 221526 CTCCGATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATA 221583 | |||| |||||| || | ||||| | ||||| | ||| || || ||||| || Sbjct 48045 CACCGAGACCGATAGGACGGTGTCGCATGTTGCTGTTGCGT--GCCTCGATGACGGGGTA 47988 Query 221584 AAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAG 221643 |||||| ||||| ||||| | |||| |||| ||| | || |||||| || Sbjct 47987 GTGGTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCTCGTGAAG 47928 Query 221644 CTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAG 221703 ||||| | || ||| || |||| | | || ||| | | | || Sbjct 47927 CTTCTTG------------AAGTCGAAGCGCTCGTTGGGAATGTCAACATAGGTGGGAAG 47880 Query 221704 GGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATC 221761 || | || ||||| |||||||| ||||| || | || || |||| |||||| Sbjct 47879 AGCGAGAGAAGCAAGGTTGCACACGGCGACCTCATCA--GGTGCAGTGTACTCGATGATC 47822 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 ||||| || | |||| || ||||| ||||||| || || || |||||| ||| Sbjct 47821 TCTGTGCACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG 47762 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 ||||| || ||||| ||||| ||||| ||| ||||| | ||||||| | || || | Sbjct 47761 GCAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCG 47702 Query 221882 TCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATACC 221939 | ||||| | |||| |||| | ||| || ||| | ||||| || | | | Sbjct 47701 TACCAGACCT-TCTGTGCGCGGATAGTC-TCGCGACCACGGCCCTCACGCTCGTACTTCT 47644 Query 221940 CGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGG 221999 || || ||| || |||| || ||||| | ||| | || || || ||| | | Sbjct 47643 CG---TACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAG 47587 Query 222000 GACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCC 222059 | ||||||||| |||||| ||| | || || | || |||||| | ||| ||||||| Sbjct 47586 GGCACATCAGAGTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCC 47527 Query 222060 ACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGAT 222119 |||| || | ||||| || | | || || ||| ||||| ||| || | || | Sbjct 47526 ACAGGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGT 47467 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 ||| || || ||||| |||||||| ||||| || |||| || | || ||||| | Sbjct 47466 CCAGGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGC 47407 Query 222180 GCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGC----GTTGAAGATGCGAAGGGTC 222235 |||||||||||||||| || || | | || | |||| | | ||||| | Sbjct 47406 GCTTGTTGCCACCCTGGTCGACG----TAACGAGCGGTGTTGTTGTAAACACGAAGCATG 47351 Query 222236 GGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA-- 222293 || || || |||||||| |||||||||||| |||||| ||||| ||| | | Sbjct 47350 GGAACGAGACCGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATG 47291 Query 222294 -GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTG 222352 ||| | || || | || |||||||| |||| || ||||||||||||||| | ||| Sbjct 47290 CGGTGAGTGTT-GAGA--CCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTG 47234 Query 222353 AGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGAC 222412 |||||||| ||| ||||| || ||| ||||| | || | || || || |||| Sbjct 47233 AGAGTGTCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCA 47174 Query 222413 ATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCC 222472 | ||| | | | || || ||| | || ||||| || ||| ||||||||||| Sbjct 47173 AGCTGTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTAAAGTACTTG 47114 Query 222473 CTAGACATCAGATCGTACGTCTCTA---CGACTCTGGCGATGTTGTCCCCGTGAATCTGC 222529 | ||||| | ||| ||||| | || | || |||||| ||| ||||| || Sbjct 47113 TTGGACATGTAGTTGTAGGTCTCGATCGCGGC-CT--CGATGTCGTCGCCGTGGATACCG 47057 Query 222530 ATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGA 222585 | || || |||| ||||| ||| || ||||| || || || | || || Sbjct 47056 ACAGCAACTCGCATGATCATGTGCTGTGGTCTCTCGGCA--ACTTTGCCGTCGA--TGCG 47001 Query 222586 GAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCC 222645 ||| || || || || || |||||||| || ||||| | | || ||||| | | | Sbjct 47000 GAGGAGATATGAGCGCTCAAGCGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTC 46941 Query 222646 GTGAACCACGGCGGCGTCCAGCTC--CGACTTGTGCTTTACGCTCAACTCGAAAAAGCGC 222703 || || | ||| | || |||||| || | || ||| | | | || | | || | Sbjct 46940 GTAGACAATGGCCGAGTTCAGCTCATCGGC--GTTCTTCATGATGGTCTGGTAGGTGCTC 46883 Query 222704 TCAGACACGAGGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCAC 222763 || | | | || || || || || | |||||| || | || ||| || | Sbjct 46882 TCGGCAATCATGGATGCACGCTTCTTCGTCTTGGGGTTGACATAGTCGTAAAGGTCTTGA 46823 Query 222764 ATGGCATCAGAGAACGTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGAC 222823 ||| || |||| || | ||||||||||| || || ||||| ||||| || | Sbjct 46822 ATGACAGCAGAAAATTGCTTCTTCGTCTGCTTGTGAAGGTTGGACACCGCGATACGGGCA 46763 Query 222824 GCCAAGATACCATAGTCAGGGTGCACGGTGGTCATG 222859 || | ||| | ||||||||||| | ||||||| Sbjct 46762 GCGAGGATGGCGTAGTCAGGGTGGGTGACGGTCATG 46727 >seq157 Length=447866 Score = 232 bits (256), Expect = 1e-55 Identities = 571/865 (66%), Gaps = 40/865 (5%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| || || ||||||||||| Sbjct 173680 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGATTGATCTC 173739 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || || ||| ||| ||||| ||| ||| ||| Sbjct 173740 TCCAAGGATCTTCACGACTGGAACAAGCGTCT---CAACGACGATGAGCGTTTCTTCATT 173796 Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | ||||| | || ||||| || |||||||| || || || |||||||| || |||| Sbjct 173797 TCACACGTGCTCGCCTTCTTCGCCGCCTCTGACGGCATTGTCAACGAGAACCTTGTCGAG 173856 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | || |||||| | ||||| || |||||||| |||||||| Sbjct 173857 CGCTTCAGCTCCGAGGTGCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 173916 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGAC 25767 || || || | ||||| ||| || || || || || || ||||| | ||| Sbjct 173917 ATGGAGAACATCCACTCCGAGACCTACTCC---CTCCTCATCGACACCTACATCAGCGAC 173973 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 ||| | || | | || || |||||||| |||| ||| ||||| | |||| Sbjct 173974 GTCCGCCAGCGCCAGTACCTCTTCAACGCCATCGACAACATTCCCTGCATCCGTAAGAAG 174033 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 || ||||| || ||||||| | | ||| | || || | | || || || Sbjct 174034 GCTGACTGGGCTCTGCGATGGATCAGCGACGAGAAGTCCACCTTCGCCTGCCGTCTCGTT 174093 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 ||||||||||| || || |||||||| ||| || ||||| || | ||||||||| | Sbjct 174094 GCCTTTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTTCTGGTTG 174153 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || |||| | || || ||| ||||||||||| ||| | |||||| Sbjct 174154 AAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCTCGTGACGAG 174213 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC---CACAAACCT 26064 || | |||| || || ||||||||||||| | ||| |||| ||||| ||| Sbjct 174214 GGCATGCACACTGACTTCGCCTGCCTGCTCTTC-----TCAC-AGCTCAAGCACAAGCCT 174267 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || | || ||| | || ||||||| ||||||||| |||||| ||||||| | Sbjct 174268 TCGCCTGACCTCGTACAGAGCATCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTC 174327 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | ||||||||| || |||||| ||||||||||| Sbjct 174328 TCCGACGCTCTGCCTTGTGCCCTGCTCGGCATGAACGCCAACCTCATGTGCCAATACATT 174387 Query 26185 GAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG----CCAGA--CTCTACAGT 26238 |||| || ||||||| |||||| || | ||||| | ||| |||||| Sbjct 174388 GAGTTCGTCGCCGACCGTCTGCT------CCTCGCACTCGGCAACAAGAAGTTCTACA-- 174439 Query 26239 ACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCT 26296 |||| | ||||| |||||||| ||||| ||||| || | | || ||||||||||||| Sbjct 174440 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCT 174499 Query 26297 TTGAAAAGAGGGTCGGCGACTATCA 26321 | || ||| | |||||||| || || Sbjct 174500 TCGAGAAGCGTGTCGGCGAGTACCA 174524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839761016960