Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq157 152 6e-31 seq420 138 1e-26 seq112 134 2e-25 seq127 122 1e-21 seq210 118 1e-20 >seq157 Length=447866 Score = 152 bits (168), Expect = 6e-31 Identities = 225/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| || ||| |||||| |||||||||||||| | || ||||| Sbjct 174530 GCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 174471 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | | ||||| | | Sbjct 174470 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCGAGG 174411 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||||||||| ||||| ||||| |||||||||||| |||||||||||||| Sbjct 174410 AGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCGAGC 174351 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | ||| | ||||| | |||||| || |||||| |||| Sbjct 174350 AGGGCACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCACAGCCTCGGTGATG 174291 Query 868931 AT-CTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGG 868988 || || ||| | | ||| | ||| ||||||| |||| | | |||||||||||| Sbjct 174290 ATGCT--CTGTACGAGGTCAGGCGAAGGCTTGTGCTTGAGCTGTGAGAAGAGCAGGCAGG 174233 Query 868989 CAAAGTCGCAGTGCA 869003 | ||||| ||||| Sbjct 174232 CGAAGTCAGTGTGCA 174218 Score = 116 bits (128), Expect = 5e-20 Identities = 200/286 (70%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| || || | ||||||||| |||||| Sbjct 174215 CCCTCGTCACGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTC 174156 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | ||| ||||| | | ||| ||| ||||| |||||||| |||||||| |||||| Sbjct 174155 TTCAACCAGAAGATAGAGGCGAACGAGCCAGAGAAGAAGATGCCTTCGACGGCAGCAAAG 174096 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 | | ||| || ||| |||||| || | || | | ||||||| || |||||| Sbjct 174095 GCAACGAGACGGCAGGCGAAGGTG--GACTTC-TCGTCGCTGATCCATCGCAGAGCCCAG 174039 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT--CCTTTT 869417 || ||||| || | | | || | ||||||||||| ||||||| | | | Sbjct 174038 TCAGCCTTCTTACGGATGCAGGGAATGTTGTCGATGGCGTTGAAGAGGTACTGGCGCTGG 173979 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || || ||| ||||||||||| ||||| || |||||||| Sbjct 173978 CGGACG--TCGCTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTC 173935 >seq420 Length=217627 Score = 138 bits (152), Expect = 1e-26 Identities = 287/425 (68%), Gaps = 12/425 (3%) Strand=Plus/Plus Query 18067 ACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGC 18126 ||||||||||| || | || | || | ||||||||||||||| | |||| ||| Sbjct 116302 ACATTCGGCAACTACTTCCGCGTGTCGACGTATGGCGAGTCGCACGGCAAGAGCGTTGGC 116361 Query 18127 TGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAG 18186 |||||| |||||||||||||||| || | || | ||||| ||||||||||||||| Sbjct 116362 TGCATCGTCGACGGCGTGCCGCCAGGCCTCAAGCTCACAGAGGCAGACATCCAGCCTCAG 116421 Query 18187 TTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGC 18246 || || ||||| || || ||| |||| || |||| || ||| | ||| || | Sbjct 116422 ATGACCCGTCGCCGTCCTGGACAGAGCGCGCTCACCACACCTCGCGATGAGAAGGACAGA 116481 Query 18247 GTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCG-GC--CTC 18303 ||| |||||||| || || ||| |||| |||| ||||| | ||| | | || | | Sbjct 116482 GTCGAGATCCAGTCTGGTACTGAGTTCGGCGTCACCCTCGGTACACCCATTGCGCTGCGC 116541 Query 18304 TTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT------TCCGACATGTGCAAGGTG 18357 || || |||| || ||| |||| |||||| | |||| |||| | Sbjct 116542 GTTATG---AACCAGGATCAGAGGCCGAAGGACTATGGCAGCAGCACCATGGACAAGTTC 116598 Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || ||| |||||||||| || ||| ||| || ||||| ||||||| || Sbjct 116599 CCCCGACCCAGTCACGCCGACTGGACGTACCTGGAGAAATACGGTGTCAAGGCCAGCTCT 116658 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| ||| | || || |||||| | || ||||| ||||| || |||| Sbjct 116659 GGCGGTGGCAGAAGCAGCGCTCGTGAGACCATTGGCCGTGTCGCGGCCGGTGCCATCGCT 116718 Query 18478 GAGAA 18482 ||||| Sbjct 116719 GAGAA 116723 Score = 104 bits (114), Expect = 3e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || || || || || |||||| | ||| || |||| | |||| Sbjct 116957 AGGACAGCATTGGTGGTACCGTCACTTGCGTGATCAGGAACTGCCCTTCAGGTTTGGGCG 117016 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 |||| ||||| |||||| | || ||| | ||||| ||||| ||||| || ||||| |||| Sbjct 117017 AGCCCTGCTTCGACAAGCTGGAAGCCACACTCGCACACGCTATGCTCTCCATCCCTGCCA 117076 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| |||||||| ||| Sbjct 117077 CCAAGGGTTTCGAGATCGGC 117096 >seq112 Length=229664 Score = 134 bits (148), Expect = 2e-25 Identities = 134/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| ||| | || || ||| | ||||| |||| Sbjct 61568 GTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTGTTCGAGATCATCCTTGCCG 61510 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 | |||||| | || |||||| | || ||||| | || |||||| |||| || ||||||| Sbjct 61509 CAAACTACATGGATATCAAGGCGCTTCTCGACGTGGGCTGCAAGACTGTTGCGAACATGA 61450 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||| |||||||||||||||||||| ||||| || |||||| || ||| Sbjct 61449 TCAAGGGAAAGTCGCCCGAGGAGATCCGTAAGACATTCAACATCCAGAACG 61399 >seq127 Length=55032 Score = 122 bits (134), Expect = 1e-21 Identities = 184/260 (71%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| | || || |||||||| ||||| |||||||| Sbjct 47393 CTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGACCGTTGGA 47334 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| | | ||| || || | ||| || | ||| | | | || Sbjct 47333 GGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAGTGTTGAGACC 47274 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || ||||||||| | ||||| |||||| ||||||||||| ||||| Sbjct 47273 AATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTAGATACCCTC 47214 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACG--AGTTTTGCGGGTGCGCCGTG 1630302 || ||| |||||||||| | || ||||| |||| || | ||| || | || Sbjct 47213 AATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTGTGC--CTGAGGGGTA 47156 Query 1630303 CCGGCGTTGAAGAGCGTGGG 1630322 || ||| |||||||||| || Sbjct 47155 CCTGCGCTGAAGAGCGTAGG 47136 Score = 122 bits (134), Expect = 1e-21 Identities = 293/444 (66%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGC-CGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220 ||| || |||||| ||||||| ||||| | || | || |||||||||| ||||||| Sbjct 47832 ACTCGATGATCTCTGTGCACAAGTTGGAGCTGCGAA-TGGTGCCCAGGTTCTTCTGGTTG 47774 Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280 | | ||||| | || || |||| |||||| |||| ||||||||||| ||| ||| Sbjct 47773 CTCTTGCGGTTGGCAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCC 47714 Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTC-CGCG--CGCGGCCCTNN 1628337 ||| |||||| |||||| || | ||| | || |||| |||| | ||||||| Sbjct 47713 TCGAGGATGGCGTACCAGACCTTCTGTGCGCG---GATAGTCTCGCGACCACGGCCCTCA 47657 Query 1628338 NNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGC 1628397 || || || |||||||| ||| || ||||| Sbjct 47656 CGCTCGTACTTCTCGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGG 47597 Query 1628398 GCCTCGGACGGACAAAAGAGCGACCAGTCGCCAC-CGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | || | ||||| ||| | || || | || ||| || | Sbjct 47596 CACTCGTGAGGGCACATCAGAGTCCAGTTGCCGTTCTGTT-CCACACGCTTCATGAACAA 47538 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| ||||||| ||||| |||||||| || || ||| || |||||||||||||| Sbjct 47537 GTCGGGGATCCACAGGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTT 47478 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| ||||| || || | |||||||||||||| ||||| |||||| ||||| Sbjct 47477 CTTGCGAAGGTCCAGGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAA 47418 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || ||||||| ||| || Sbjct 47417 GGCACCGGGGCGCTTGTTGCCACC 47394 >seq210 Length=50979 Score = 118 bits (130), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 1852028 TCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTC 1852084 ||||| ||||||| | |||| |||||| | | || | | ||||||||||| Sbjct 39490 TCGGGGGCGTCGAGCAGGTCGATTTTGGAGTCCGGGTCCGACGAGGACATCTTGCCGCCT 39549 Query 1852085 TCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACC 1852144 || |||||||| | ||||||||| | |||||| |||||| || ||||||| | | Sbjct 39550 TCTTGCAGGCCCGGGATGAGCGGGTTCATGAGGTGGGCGCGCTTGCGGTAGCCGATGCGC 39609 Query 1852145 GGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCG 1852204 || ||| ||| || | || || || |||||||||||| ||||| || || ||| Sbjct 39610 GGGAGGCACTCGACGGCGAGGGTGAAGATTTTGCGCTGGTCGACGCCGCCGAATTGCGCG 39669 Query 1852205 TCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 || ||| | |||| || ||||||||||| ||||||| ||||||| Sbjct 39670 TCCACGCCCAGGTACTCTTCGTCGAGGGCTTGCATGACGGGGTAGA 39715 Score = 86.0 bits (94), Expect = 8e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1852498 GTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAG 1852557 |||||||||| | ||||||||||||| | |||| |||| |||||||| || Sbjct 39987 GTTGTCGAGGAAGCCGTGCACGTCGGCGAGCAGGACGGTGACTTCGCAGCCGGCGGCCAG 40046 Query 1852558 AAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGC 1852617 || ||||| | || | |||||||| |||||||| ||| || ||||| || | || Sbjct 40047 GAACTCGGCGATCTTCAGCATGGGCACGAAGTAGCCGCAGTGAGGCTTGCCGGTGGTGGC 40106 Query 1852618 CGTGCCCCAATATATGATCAGGGGGCGCTC 1852647 |||||||| || || | ||||||||||| Sbjct 40107 GGTGCCCCAGTAGATCTTGAGGGGGCGCTC 40136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107103583927578