Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq157 163 4e-34 seq210 134 2e-25 seq127 129 9e-24 seq112 125 1e-22 seq17 107 3e-17 seq190 89.7 8e-12 >seq157 Length=447866 Score = 163 bits (180), Expect = 4e-34 Identities = 235/329 (71%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| || || | ||||||||| |||||| Sbjct 174215 CCCTCGTCACGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCTTC 174156 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | ||| ||| ||||| |||||||| |||||||| |||||| Sbjct 174155 TTCAACCAGAAGATAGAGGCGAACGAGCCAGAGAAGAAGATGCCTTCGACGGCAGCAAAG 174096 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | ||||| || ||| || ||| | ||| | | ||||||| || ||||| Sbjct 174095 GCAACGAGACGGCAGGCGAAGGTGGACTT---CTCGTCGCTGATCCATCGCAGAGCCCAG 174039 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | | |||| | ||||||||||| ||||||| | || | Sbjct 174038 TCAGCCTTCTTACGGATGCAGGGAATGTTGTCGATGGCGTTGAAGAGGTACTGGCGCTGG 173979 Query 794581 ACCGG--GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 ||| ||| ||| |||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 173978 --CGGACGTCGCTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGGATGTTCT 173921 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || |||||||||||| || |||||| Sbjct 173920 CCATCATGATCTGGAAGCCGTAGAAGCAG 173892 Score = 159 bits (176), Expect = 5e-33 Identities = 229/317 (72%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| |||||||| || ||| |||||| |||||||||||||| | | Sbjct 174538 TGACACCAGCCTTCTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 174479 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | |||| ||||| | |||| Sbjct 174478 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGA 174419 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||| | ||||| |||||||||||||| |||||||| |||||||||||| |||||| Sbjct 174418 GTGCGAGG--AGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGCGTT 174361 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| || || ||||| | ||| || ||||| | |||||| || || Sbjct 174360 CATGCCGAGCAGGGCACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCACAGC 174301 Query 794129 CTCGATGATGAT-CTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAG 794186 |||| ||||||| || ||| | | ||| | ||| ||||||| |||| | | || Sbjct 174300 CTCGGTGATGATGCT--CTGTACGAGGTCAGGCGAAGGCTTGTGCTTGAGCTGTGAGAAG 174243 Query 794187 AGCAGGCAGGCAAAGTC 794203 ||||||||||| ||||| Sbjct 174242 AGCAGGCAGGCGAAGTC 174226 >seq210 Length=50979 Score = 134 bits (148), Expect = 2e-25 Identities = 403/606 (67%), Gaps = 36/606 (6%) Strand=Plus/Plus Query 2411415 CATCTTGCCGTCCTTGGTG-AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGC 2411473 |||||||||| |||| || |||||||| | |||||||| | |||||| |||||||| Sbjct 39537 CATCTTGCCG-CCTTCTTGCAGGCCCGGGATGAGCGGGTTCATGAGGTGGGCGCGCTTGC 39595 Query 2411474 GGTAGCCCA-GCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGC 2411532 ||||||| | ||| ||| ||| ||| || | || ||||| |||||||||||| Sbjct 39596 GGTAGCCGATGCG-CGGGAGGCACTCGACGGCGAGGGTGAAGATTTTGCGCTGGTCGACG 39654 Query 2411533 CCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAG 2411592 ||||| || || ||||| ||| | |||| || ||||||||||| ||||||| |||||| Sbjct 39655 CCGCCGAATTGCGCGTCCACGCCCAGGTACTCTTCGTCGAGGGCTTGCATGACGGGGTAG 39714 Query 2411593 ACGAGGTTGCTGAGCGGCGGGTTGCGGTCCATCTTGACCACCTGGGCGGCGGCCTT--TT 2411650 | || | ||| || ||| | | |||||| || | || | ||||||| | Sbjct 39715 ATTTGGGAGGAGAGGGGAGGGGCCTCGACTTGCTTGACGACTTCGGAGCCGGCCTTGGTG 39774 Query 2411651 GCGCCGTGCCGACGGTCACGCGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGC 2411710 || |||| | ||| ||| | || |||||||| |||||||| | |||| ||| | Sbjct 39775 GCATCGTG--GCCGGAGACGGAAGTCGACAGGCGCAGGAGGTCGAAGGGGTAGCCGGAGA 39832 Query 2411711 CATGCTGGT---AATCGCTGCCGCG---CACAAATTC-GAG------ACGA--TCCA--- 2411752 | | | || | | || |||||| | | || ||| |||| | || Sbjct 39833 AAGGGTCGTTGGAGTTGCCGCCGCGGGTCTGGTAGTCGGAGCCGGTCACGAACTTCAGGC 39892 Query 2411753 GCGGGACGCCAATGTGC------TGGAGCATGGCCTTGATGGCAAACTCGTACCAGCGGC 2411806 ||| |||| | | || | | |||| | ||||||| | ||| ||| | Sbjct 39893 GCGAGACGTCCACGTTCACCGCACGCAGCACCTCGGTGATGGCGTAGCGGTAGTAGC-CC 39951 Query 2411807 AC-CGGTGCTCGACGAGGTCCCACGGCGTCTTGCCATTGTCGAGGTGGGCGTGCACGTCG 2411865 || || | |||||| || || | ||| ||||||||| | ||||||||||| Sbjct 39952 ACACGCTCGCGGACGAGCTCAATAGGGGCTTTGAGGTTGTCGAGGAAGCCGTGCACGTCG 40011 Query 2411866 GCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAAAGTCGGCCAGTTTAAAGATGGGC 2411925 || | |||| | || || ||||| || || ||||| | || | |||||| Sbjct 40012 GCGAGCAGGACGGTGACTTCGCAGCCGGCGGCCAGGAACTCGGCGATCTTCAGCATGGGC 40071 Query 2411926 ACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGCGGTGCCCCAATAAATGCAGAGAGG 2411984 || |||||||| ||| || |||||||| || | ||||||||||| || || ||| || Sbjct 40072 ACGAAGTAGCCGCAG-TGAGGCTTGCCGGTGGTGGCGGTGCCCCAGTAGATCTTGAGGGG 40130 Query 2411985 GCGCTC 2411990 |||||| Sbjct 40131 GCGCTC 40136 >seq127 Length=55032 Score = 129 bits (142), Expect = 9e-24 Identities = 298/448 (67%), Gaps = 18/448 (4%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||| ||||||| ||||| | || ||||||||||||||| |||||| Sbjct 47832 ACTCGATGATCTCTGTGCACAAGTTGGAG--CTGCGAATGGTGCCCAGGTTCTTCTGGTT 47775 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| | || || |||| |||||| |||| || ||||||| ||| || Sbjct 47774 GCTCTTGCGGTTGGCAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGC 47715 Query 2071692 CGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCC 2071745 | || |||||| |||| | || | |||||| | ||| ||||| ||||| Sbjct 47714 CTCGAGGATGGCGTACCAGACCTTCTGTGCGCGGATA-----GTC-TCGCGACCACGGCC 47661 Query 2071746 CTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCC 2071805 || | || || || || | |||||| | ||| || || Sbjct 47660 CTCACGCTCGTACTTCTCGTACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACC 47601 Query 2071806 GGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC-CAGTCACCACGCGGCGCATAA 2071864 ||| |||| ||||| | || | ||||| |||| | || |||| || ||| | Sbjct 47600 GGGGCACTCGTGAGGGCACATCAGAGTCCAGTTGCCGTTCTGTT-CCACACGCTTCATGA 47542 Query 2071865 ACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGT 2071924 ||| |||| |||||||| |||| ||||| || || || ||| || |||||||||| Sbjct 47541 ACAAGTCGGGGATCCACAGGGCGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGT 47482 Query 2071925 GGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGG 2071984 ||||||| ||||| || || | || |||||||||||| ||||| |||||| | Sbjct 47481 GGTTCTTGCGAAGGTCCAGGAAGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAG 47422 Query 2071985 CAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||| || ||||||| ||| || Sbjct 47421 CAAAGGCACCGGGGCGCTTGTTGCCACC 47394 Score = 104 bits (114), Expect = 4e-16 Identities = 180/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| | || || |||||||| || || |||||||| Sbjct 47393 CTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGACCGTTGGA 47334 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| | | ||| || || | ||| || | ||| | | | || Sbjct 47333 GGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAGTGTTGAGACC 47274 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || ||||||||| | ||||| |||| || || |||||||| ||||| Sbjct 47273 AATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTAGATACCCTC 47214 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACG--AGTTTTGCGGGCGCGCCGTG 2073777 || ||| |||||||||| | || ||||| |||| || | ||| | | | || Sbjct 47213 AATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTGTGCCTGAGGG--GTA 47156 Query 2073778 CCGGCATTGAAGAGCGTGGG 2073797 || || |||||||||| || Sbjct 47155 CCTGCGCTGAAGAGCGTAGG 47136 >seq112 Length=229664 Score = 125 bits (138), Expect = 1e-22 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 2035580 CGACATTTCGCCGTGGGACAAGGCCTTT-TGCGAGGTCGACCAACCCACCCTCTTTGAGT 2035638 ||||||| | ||||||| || || ||| |||||||||| | || || ||| Sbjct 61580 CGACATTGAGGAGTGGGACCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTGTTCGAGA 61522 Query 2035639 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCG 2035698 | ||||| ||||| |||||| | || |||||| | || ||||| |||| |||||||| | Sbjct 61521 TCATCCTTGCCGCAAACTACATGGATATCAAGGCGCTTCTCGACGTGGGCTGCAAGACTG 61462 Query 2035699 TGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGT 2035758 | || ||| | |||||||| |||||||||||||| ||||| ||||| || |||||| || Sbjct 61461 TTGCGAACATGATCAAGGGAAAGTCGCCCGAGGAGATCCGTAAGACATTCAACATCCAGA 61402 Query 2035759 ACG 2035761 ||| Sbjct 61401 ACG 61399 >seq17 Length=88849 Score = 107 bits (118), Expect = 3e-17 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| |||| || || ||| | | Sbjct 65219 GTACTTGGTGACGGCCTTGGTGCCCTCAGACACGGCGTGCTTGGCAAGCTCACCGGGAAG 65160 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| |||| |||||||||||| |||| ||| ||| |||||| || | Sbjct 65159 GATGAGGCGGACGGAGGTCTGGATCTCACGGGAAGAGATGGTGGACTTCTTGTT-GTAGG 65101 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | || || | ||||||||| ||| ||| |||| ||||| Sbjct 65100 CGGCGAGCTTGGAGGCCTCGGTTGCGACGCGCTCGAAGATGTC 65058 >seq190 Length=211015 Score = 89.7 bits (98), Expect = 8e-12 Identities = 201/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 || || ||||| || ||||| || || |||||||| || | || || || || | | Sbjct 173765 GAAGCTGTGCTAGAGCTCAACGCATCCGACGAGCGAGGTATCGATGTGGTCCGAAACAGG 173824 Query 2019165 ATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCA 2019222 |||||| | || ||||||| || ||||| || ||||| || ||| || | | Sbjct 173825 ATCAAGGGTTTTGCGC--AAAAGAAGGTCACACTGCCTCCAGGCCGGCAAAAGCTGGTAA 173882 Query 2019223 TCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGG 2019282 |||| |||||||||||| || | || | || ||||| || ||| || || |||| Sbjct 173883 TCCTGGATGAGGCCGACAGCATGACAAGCGGTGCACAGCAAGCGCTCAGAAGAACTATGG 173942 Query 2019283 AAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCG 2019342 | | ||| | || || | || || | || |||||| |||| | | | || | Sbjct 173943 AGATCTACTCGGGAACCACAAGATTCGCATTCGCGTGCAACCAGTCGAACAAGATTATTG 174002 Query 2019343 AAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCG 2019402 | | || ||| |||||||| |||||||| | |||||||||| || |||||| ||| Sbjct 174003 AGCCGCTACAGTCGCGTTGCGCAATCTTGCGGTACTCGCGCCTCACAGATGCCCAGGTCG 174062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916200233440526