Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq127 289 3e-73 seq157 165 8e-36 seq416 120 3e-22 seq104 98.7 1e-15 >seq127 Length=55032 Score = 289 bits (320), Expect = 3e-73 Identities = 1122/1733 (65%), Gaps = 45/1733 (3%) Strand=Plus/Minus Query 148062 TGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG-CTTTATCTTCATCTC 148120 || || || || || |||||||| |||||||| | | || | | | | || || || Sbjct 48643 TGATCGATAAAGGCACCACGGTCGGCGGCCATCTGGACGATTTGACGCTGGCTA-ATTTC 48585 Query 148121 CCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGA 148180 |||| | |||||||| || |||||| | ||| || ||| | ||||||||| | || Sbjct 48584 CCAGACAGTCTTGTAAAGGATCTTGATGTCATCCGGGATGTTGGGGATGCGCTGGATGGA 48525 Query 148181 GCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAG 148240 |||| || |||| || | || ||| | ||| | | ||| | | |||| || Sbjct 48524 ACCGCCGTCGGCAATGATGCGGTTCTTCATGTTGTCGCTCCACAGGCCGCGGTCGACAAG 48465 Query 148241 GTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATA 148300 || | || || | | || || ||||| ||||||||||| || || || || || Sbjct 48464 ATCCTTGAGCAACCAAGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGACGGGAGTA 48405 Query 148301 CACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGC 148360 | |||||| || |||| || || |||||||| ||||| ||||||| || | || Sbjct 48404 GATGTTGCTGGTGTACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTAGC 48345 Query 148361 CGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTT 148420 || ||||| || || || || |||||||| | |||| | | || || ||| Sbjct 48344 AGTAGGCATAGGAGCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGGCCTT 48285 Query 148421 CAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 || ||| |||||||||| || ||||| ||||| ||||||||||||||| || Sbjct 48284 GAGTGCCTCCCAGTCCCAAAGATCGGACGGGGTCACACCCCACATGTCGTACTGGAGCTC 48225 Query 148481 GCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTC 148540 || | |||||| ||| |||| | |||| ||| || | | || || || Sbjct 48224 ACCCTTGGAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCAAGATC 48165 Query 148541 GCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGC 148600 ||| || || || ||| ||| || ||||| || || |||||||| | || Sbjct 48164 GCAAGAAGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGCTG-GC 48106 Query 148601 CGCCGACTCGCTT-TCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTA 148659 | | | || ||| | ||||| ||||| | || || || || || || | Sbjct 48105 GGGCCTCGGGCGACTCGAAAGGCATGCGCAGAGCAAGGAAGGCATCAGCGAGACCGCTCA 48046 Query 148660 CGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-GAGCGGATAG 148718 | || | || || || |||||| |||||| | ||| || ||| || || ||| Sbjct 48045 CACCGAGACCGATAGGACGGTGTCGCATGTTGCTGTTGCGTGC-CTCGATGACGGGGTAG 47987 Query 148719 TGGTTGCGGTCGATGATCTTGT-CAAGAT--TGCGCACCACC---AC--CTTTGTAATTC 148770 |||||| ||||| ||||| |||| | || || ||| || | | || | | Sbjct 47986 TGGTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCTCGTGAAGC 47927 Query 148771 TGCGCAGCAATTCAAAA---TCGTACTTGTCATCTACGATGCATCGGTTC--ACGGCGAT 148825 | | || || || |||| | | || | | | ||| ||| | |||| Sbjct 47926 TTCTTG--AAGTCGAAGCGCTCGT--TGGGAATGT-CAA--CATAGGTGGGAAGAGCGAG 47874 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||| || || ||||||||||| |||||| || || ||||||| | |||||| | ||| Sbjct 47873 AGAAGCAAGGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGATCTCTGTGCA 47814 Query 148886 CAGATTG---CTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGC 148942 || ||| |||| || | ||||| |||||| || |||||||||| |||| || Sbjct 47813 CAAGTTGGAGCTGCGAATGGT---GCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 47757 Query 148943 GTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATG 149002 || ||||| |||||| | || ||| || || ||||| | || | ||| || Sbjct 47756 ATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGG--CGTAC 47699 Query 149003 CAGGTC--CTGCGCGCGCACTTGCTGCTCGTAG-CGACCCTCCTGCTCGTATAAAGTATA 149059 ||| | ||| ||||| | || | || || ||||| ||||||| || Sbjct 47698 CAGACCTTCTGTGCGCGGATAGTCT-CGCGACCACGGCCCTCACGCTCGTACTTCTCGTA 47640 Query 149060 CAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACAT 149119 |||| ||||||| ||||||||||| |||| | ||||||||||||| ||| |||||||| Sbjct 47639 CAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGCACAT 47580 Query 149120 GAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGC 149179 || | ||| ||||| | | ||| |||||||| |||| ||||| | ||| || || Sbjct 47579 CAGAGTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGGC 47520 Query 149180 GTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCAC 149239 ||| | |||||| || || | ||||| ||| ||| ||| |||| || | Sbjct 47519 GTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAA 47460 Query 149240 GCTGAAT-ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---T 149295 | |||| ||||| |||||||| ||||| | ||| | || | || || |||| | Sbjct 47459 G-GGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTTGT 47401 Query 149296 TGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGC 149355 |||| ||||||||||||| || | ||||||| | || |||| ||| || | | | Sbjct 47400 TGCCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGAGAC 47341 Query 149356 CACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGT 149415 | ||| || ||||| || || |||| | || || || | ||| || Sbjct 47340 CGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAGTGT 47281 Query 149416 TGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGA 149475 ||| || || || || ||| ||| ||||| |||||| ||| || ||||| Sbjct 47280 TGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGTAGA 47221 Query 149476 TGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA-GCACATTTGCGGAAAA 149534 | ||||| |||||||| ||||||| | || ||||| || ||| | || | | Sbjct 47220 TACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCA-AGCTGTGCCTGA 47162 Query 149535 CGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATC 149594 | || || || ||| | || ||| ||| |||||||| || || | | ||| Sbjct 47161 GGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTAAAGTACTTGTTGGACATGTAG 47102 Query 149595 TCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATC 149654 | ||| | ||||| | || || ||||| ||||| ||||| || | || || ||||| Sbjct 47101 TTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGATACCGACAGCAACTCGCATG 47042 Query 149655 AGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCT 149714 | ||| ||||| |||| ||| || |||||| | || ||| | || | || Sbjct 47041 ATCATGTGCTGTGGTCTCTCGGCAACTTTGCCGTCGATGCGGAGGAGATATGAGCGCTCA 46982 Query 149715 AGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 || |||||| |||| ||||| | ||||| ||||||||| ||| | ||||||| Sbjct 46981 AGCGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 46929 >seq157 Length=447866 Score = 165 bits (182), Expect = 8e-36 Identities = 529/812 (65%), Gaps = 19/812 (2%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| || ||||| || ||||| || ||||| | | || ||||| | Sbjct 174525 CTGGTACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 174466 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | ||||| || | ||| | ||| | | |||||| Sbjct 174465 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCGAGGAGCAG 174406 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 ||||| || || ||||||||||| | ||||||| | ||||||||||| |||| || Sbjct 174405 ACGGTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCGAGCAGGGC 174346 Query 120531 CACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGC 120590 |||| || | || ||||||| ||| ||| ||| ||||| ||| ||| Sbjct 174345 ACAAGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCACAGCCTCGGTGATGATGCT 174286 Query 120591 GAGCATAGTGTGGCCGGGC---ATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGC 120647 | | | || | ||| |||||| | || || | | || |||||| || Sbjct 174285 CTGTA---CGAGGTCAGGCGAAGGCTTGTGCT---TGAGCTGTGAGAAGAGCAGGCAGGC 174232 Query 120648 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGG 120707 ||||| ||||||| ||||||||| || || || ||||||||| || || || || | Sbjct 174231 GAAGTCAGTGTGCATGCCCTCGTCACGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGC 174172 Query 120708 CATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCC 120767 ||||| ||| | |||| | |||| || | ||| || ||| || ||||| | ||| Sbjct 174171 CATGAGGCCACGCTTCTTCAACCAGAAGATAGAGGCGAACGAGCCAGAGAAGAAGATGCC 174112 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCA 120827 || ||| |||||||| || | || ||| || || | | ||| | | |||||| Sbjct 174111 TTCGACGGCAGCAAAGGCAACGAGACGGCAGGCGAAGGTGGACTTCTCGTCGCTGATCCA 174052 Query 120828 CTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAG 120887 || ||||| || ||||| || || | ||| || || |||| ||||| | || Sbjct 174051 TCGCAGAGCCCAGTCAGCCTTCTTACGGATGCAGGGAATGTTGTCGATGGCGTTGAAGAG 173992 Query 120888 CATGTCGCGCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCG 120946 | ||||| || | || | | || || | |||||| || ||| | || | Sbjct 173991 GTACTGGCGCTGGCGGACGTCGCTGATGTAGGTG-TCGATGAGGAGGGAGTAGGTCTCGG 173933 Query 120947 TGTGCACGCACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 ||| | | ||| |||| | || | ||| ||| | | ||||| | ||| Sbjct 173932 AGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGATCTGCA 173873 Query 121007 CCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 || | |||| | | ||||| |||||| || || || | ||| | |||||||||| Sbjct 173872 CCTCGGAGCTG-AAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCAGAGGCGGCGAAG 173814 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGA---GCTTGTGCGCAAAA 121122 || || |||||||| || ||| ||||| ||||| ||| |||||| | | Sbjct 173813 AAGGCGAGCACGTGTGAAATGAAGAAACGCTCATCGTCGTTGAGACGCTTGTTC---CAG 173757 Query 121123 TCGTCATAGTCCTTGGACAGGTCGACCTCCTC 121154 |||| | |||||||| || || | |||||| Sbjct 173756 TCGTGAAGATCCTTGGAGAGATCAATCTCCTC 173725 >seq416 Length=196129 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || ||||| || | | ||| ||| ||||||||| |||||||| Sbjct 78247 GTGGACTCCTTTTGGATGTTGTAGTCACTGAGAGTGCGACC-GTCCTCGAGTTGCTTGCC 78305 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| ||||| ||||| |||||||| |||||| ||| Sbjct 78306 GGCAAAGATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCTT 78365 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| | |||||| |||| ||||| || ||||| || || || Sbjct 78366 CACATTGTCGATAGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCAGTGAGGGT 78425 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 78426 CTTCACGAAGATCTGCAT 78443 Score = 111 bits (122), Expect = 2e-19 Identities = 131/175 (75%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| |||| || ||| ||| | ||||| |||||||||| Sbjct 78474 GGTGGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGACCA-TCCTCAAGCTGCTTGC 78532 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | ||||| |||||||| || ||||| ||||| |||||||| |||||| || Sbjct 78533 CCGCAAAGATGAGGCGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCT 78592 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | | || | ||||| | | ||| || |||| ||||| ||| || || || Sbjct 78593 TCACGTTGTCGATAGTGTCCGAAGACTCAACCTCGAGGGTGATGGTCTTTCCCGT 78647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || || || ||||||||||||||| || Sbjct 78019 GTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTCCTGCCGTCCTCGAGCTGCTTACCA 78078 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||| ||||| || ||||| || |||||||| ||||| |||| Sbjct 78079 GCGAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTGAATCTTGGACTTG 78138 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | | || || |||| |||| || ||||| || ||||| Sbjct 78139 ACGTTGTCGATGGTGTCCGATGATTCGACCTCGAGTGTGATAGTCTTGCCTGTGAGAGTC 78198 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| || |||||| Sbjct 78199 TTGACGAAGATTTGCATG 78216 >seq104 Length=125481 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | ||||| ||||| || || ||||| ||||| Sbjct 107647 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATGCCCTCCTT 107588 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||| | | || | ||||| | || ||| || |||| ||||| Sbjct 107587 GTCCTGGATCTTGCTCTTCACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGAT 107528 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAA 133651 ||| ||||| ||||| || || ||||| Sbjct 107527 GGTCTTGCCCGTCAGGGTCTTAACGAA 107501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418177442160