Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq157 215 7e-50 seq127 123 4e-22 >seq157 Length=447866 Score = 215 bits (238), Expect = 7e-50 Identities = 383/547 (70%), Gaps = 25/547 (5%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||| || |||||| | || | Sbjct 173679 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACAGCAGAGGAGATTGATC 173737 Query 1455835 TCGGCGCCGA----CACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATT 1455885 || | || |||| ||||| | ||| | | |||||| ||||| | Sbjct 173738 TCTCCAAGGATCTTCACG----ACTGGAACAAGCGTCTC--AACGACGATGAGCGTTTCT 173791 Query 1455886 TCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTG 1455945 |||| ||||| |||||||| || ||||||| || ||||| || ||||||||| Sbjct 173792 TCATTTCACACGTGCTCGCCTTCTT-CGCCGCCTCTGACGGCATTGTCAACGAGAACCTT 173850 Query 1455946 GCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAG 1456005 | || ||||| | ||||| || | || ||||| || | || ||||| |||||| Sbjct 173851 GTCGAGCGCTTCAGCTCCGAGGTGCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAG 173910 Query 1456006 ATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG 1456065 ||| || || ||||||||||| || |||||||| ||||| |||||||||||| ||| Sbjct 173911 ATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGACACCTACATCAGC 173970 Query 1456066 GAC--CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGA 1456123 ||| ||| | || | ||||||| ||||||||||| | || | | | | Sbjct 173971 GACGTCCG--CCAGCGCCAGTACCTCTTCAACGCCATCGACAACATTCCCTGCATCCGTA 174028 Query 1456124 AAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCG 1456183 | ||||| |||||||| || ||||||| | | || | || || ||| ||| || Sbjct 174029 AGAAGGCTGACTGGGCTCTGCGATGGATCAGCGACGA-GAAGTCCAC-CTTCGCCTGCCG 174086 Query 1456184 GCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 ||||| | |||||| | |||||| |||||||| ||||| ||| ||| | | ||||| Sbjct 174087 TCTCGTTGCCTTTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATCTT 174146 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTC 1456302 ||| | |||||||| ||||||||| | |||||| ||| |||||| ||||| || Sbjct 174147 CTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTT-ACCTTCTCCAACGAGCTTATCTCTC 174205 Query 1456303 GCGACGA 1456309 | ||||| Sbjct 174206 GTGACGA 174212 Score = 145 bits (160), Expect = 1e-28 Identities = 233/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| |||||| ||||| ||||||| | | |||| ||||||| ||| | ||| Sbjct 174218 TGCACACTGACTTCGCCTGCCTGCTCTTCTCACAGCTCAAGCACAAGCCTTCGCCTGACC 174277 Query 1456512 T-GCCCA-AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 | | || |||| ||||| |||||| || |||||| | ||||| || ||| | Sbjct 174278 TCGTACAGAGCA--TCATCACCGAGGCTGTGACCATCGAGCAGGAGTTCCTCTCCGACGC 174335 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 ||||| || || ||||||||||||||| | ||||||||||| ||||||| | || Sbjct 174336 TCTGCCTTGTGCCCTGCTCGGCATGAACGCCAAC-CTCATGTGCCAATACATTG-AGTTC 174393 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCC 1456689 ||||||||||| |||||| || |||||| | ||||| |||| | ||||||| Sbjct 174394 GTCGCCGACCGTCTGCTCCTCGCACTCGGCAAC-AAGAAGTTCTACAACGCCACCAACCC 174452 Query 1456690 GTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT 1456749 ||| | |||||| ||||| || | |||||||||||||| |||||| || || Sbjct 174453 CTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGT 174512 Query 1456750 -GGCGAGTACGCCAAGGCCGGCGTCA 1456774 ||||||||| ||||| || |||| Sbjct 174513 CGGCGAGTACCAGAAGGCTGGTGTCA 174538 >seq127 Length=55032 Score = 123 bits (136), Expect = 4e-22 Identities = 300/451 (67%), Gaps = 18/451 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || |||||||| |||||| || || |||||||||||| || Sbjct 47394 GGTGGCAACAAGCGCCCCGGTGCCTTTGCTATCTACCTCGAGCCATGGCACGCCGACATC 47453 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || || |||||||| |||||||||||||||| || | ||| || || | Sbjct 47454 ATTCCCTTCCTGGACCTTCGCAAGAACCACGGCAAGGAAGAAGT----CCGTGCTCGTG- 47508 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG- 261966 | ||||| |||| |||||||| |||| |||| ||| || ||| || | || Sbjct 47509 -ACCTCTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGCGTGTGGA-ACAGAACGG 47566 Query 261967 CGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGC 262026 | ||||| | || | ||||| |||| ||||| || ||| ||| |||| || Sbjct 47567 CAACTGGACTCTGATGTGCCCTCACGAGTGCCCCGGTCTTGCCGATGTCTACGGCGAGGA 47626 Query 262027 CTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNN--CGCG-GACCGTCGTGCC 262083 || || || || || ||| |||| ||| || | Sbjct 47627 GTTCGAGGCGCTGTACGAGAAGTACGAGCGTGAGGGCCGTGGTCGCGAGACTATC---CG 47683 Query 262084 CGCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACAT 262143 ||||| || |||||| ||||| ||| ||| || |||||||||||| |||| ||| Sbjct 47684 CGCACAGAAGGTCTGGTACGCCATCCTCGAGGCTCAGGTCGAGACCGGCAACCCCTTCAT 47743 Query 262144 GGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACA 262201 | | ||||| || || | ||||| | ||||||||| ||||||||||||||| || || Sbjct 47744 GCTTTACAAAGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATTCG-CA 47802 Query 262202 GAGGCCAACCTGTGCACCGAGATCGTCCAGT 262232 | ||||| ||||||| |||||| || ||| Sbjct 47803 G-CTCCAACTTGTGCACAGAGATCATCGAGT 47832 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || |||||||| | || || || || | | ||| | |||| ||||| || | ||| Sbjct 47136 CCTACGCTCTTCAGCGCAGGTACCCCTCAGGCACAGCTTGCGTCCTGCTTCCTTATCGAC 47195 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || ||||| ||||| ||||| ||||| ||||| | |||||| Sbjct 47196 ATGAAGGATGACAGCATTGAGGGTATCTACGACACTCTCAAAATCTGCGCCATGATCTCC 47255 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| || || || || ||| | | | ||| | || ||| | || || ||| | Sbjct 47256 AAGAACGCTGGTGGTATTGGTCTCAACACTCACCGCATTCGTGCCACTGGTGCTTACATT 47315 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 | ||||||||||| |||||||| || || ||||||||||| |||| ||| |||| Sbjct 47316 GGCGGCACCAACGGTACCTCCAACGGTCTCGTTCCCATGCTTCGTGTTTACAACAACACC 47375 Query 260165 GCGCGCTACGTCGACCAG 260182 || || |||||||||||| Sbjct 47376 GCTCGTTACGTCGACCAG 47393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177769339902308