Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq127 212 8e-50 seq157 141 1e-28 >seq127 Length=55032 Score = 212 bits (234), Expect = 8e-50 Identities = 896/1399 (64%), Gaps = 41/1399 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||| |||||||| ||| |||| ||| || | ||| Sbjct 48406 TAGATGTTGCTGGTGTACGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAAGTGCTA 48347 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||| || || | ||||||| ||| || ||||| | || ||| | || Sbjct 48346 GCAGTAGGCATAGGAGCAACGAGAAGGGAGTTGCGAAGACCGTGCTCGGCAATCCTGGCC 48287 Query 118302 TTGAGAGCGTCCCAGTCGTAG---TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 ||||| || |||||||| | | | | ||| | ||| ||||| || ||||| Sbjct 48286 TTGAGTGCCTCCCAGTCCCAAAGATCGGACGGGGTCACACCC---CACATGTCGTACTGG 48230 Query 118359 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 118418 || ||| | ||| || || || || | | |||||||| | || ||| || Sbjct 48229 AGCTCACCCTTGGAGGCGGGGGAGCCAGCGTAGGTCTCATACGTTCCAAGCTTCTCAGCA 48170 Query 118419 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT- 118477 | ||| | || ||||| ||||| || || || ||||| || | || | Sbjct 48169 AGATCGCAAGAAGCAGTAAGGGCAGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGC 48110 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGAC 118536 || | ||||||| || || || | | || || | || || |||| ||||||| Sbjct 48109 TGGCG-GGCCTCGGGCGACTCGAAAGGCATGCG-CAGAGCAAGGAAGGCATCAGCGAGAC 48052 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA--- 118593 | |||||||| || || || || |||| ||| || || || || ||| | Sbjct 48051 CGCTCACACCGAGACCGATAGGACGGTGTCGCATGTTGCTGTTGCGTGC---CTCGATGA 47995 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 |||| || || |||||| | | || | || |||||||| |||| || | Sbjct 47994 CGGGGTAGTGGTTGACCTCGATACACTTGTTCAAGTTCTTGGTGACGACCTGGACGACCT 47935 Query 118654 CATGAAGCTTTTCGTAATCAAAAC------TGCGAGTCTCTTCATTGACATACTTAGGAA 118707 | |||||||| | | | || || | || || | || ||||| | |||| Sbjct 47934 CGTGAAGCTTCTTGAAGTCGAAGCGCTCGTTGGGAATGTCA------ACATAGGTGGGAA 47881 Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767 | |||| || || || || ||||| | | |||||| |||||||||| || || | Sbjct 47880 GAGCGAGAGAAGCAAGGTTGCACACGGCGACCTCATCAGGTGCAGTGTACTCGATGATCT 47821 Query 118768 CCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTAC 118827 | ||||||||||| || || ||||||||||| |||||| || || ||| ||| Sbjct 47820 CTGTGCACAAGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGG 47761 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCT 118887 ||||| |||||||||||| | || | || ||||| || | || ||| || || | Sbjct 47760 CAGCATCTTTGTAAAGCATGAAGGGGTTGCCGGTCTCGACCTGAGCCTCGAGGATGGCGT 47701 Query 118888 TCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGT 118947 |||||| | || | | ||| || | || ||||| ||||||||| || Sbjct 47700 ACCAGACCTTCTGTGCGCGGATAGTCTCGCGACCACGGCCCTCACGCTCGTACTTCTCGT 47641 Query 118948 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 119007 | || || || ||||| || || | | || | || || || || | ||||| | Sbjct 47640 ACAGCGCCTCGAACTCCTCGCCGTAGACATCGGCAAGACCGGGGCACTCGTGAGGGCACA 47581 Query 119008 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067 |||| ||| | || || || || ||||||||||| | ||| |||||||| || | Sbjct 47580 TCAGAGTCCAGTTGCCGTTCTGTTCCACACGCTTCATGAACAAGTCGGGGATCCACAGGG 47521 Query 119068 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | ||||||| || ||| || ||||||| | || || || || | |||| | Sbjct 47520 CGTAGAAGAGGTCACGAGCACGGACTTCTTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 47461 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTAC 119181 || ||||| || |||||||| || || ||||| | || | | || | ||| Sbjct 47460 AGGGAATGATGTCGGCGTGCCATGGCTCGAGGTAGATAGCAAAGGCACCGGGGCGCTT-- 47403 Query 119182 GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGA 119241 | | ||| |||||| || || | || ||| ||| | ||||||||||| |||| || Sbjct 47402 GTTG-CCACCCTGGTCGACGTAACGAGCGGTGTTGTTGTAAACACGAAGCATGGGAACGA 47344 Query 119242 TACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGA 119301 ||| | ||| || || || || | ||| || | |||| | | ||| Sbjct 47343 GACCGTTGGAGGTACCGTTGGTGCCGCCAATGTAAGCACCAGTGGCACGAATGCGGTGAG 47284 Query 119302 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 119361 ||| | ||||||||| || || ||| ||||| ||||| ||||| || ||| Sbjct 47283 TGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATTTTGAGAGTGTCGT 47224 Query 119362 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCC 119421 |||| || || || |||| |||| | |||| ||||||||| || | || ||| Sbjct 47223 AGATACCCTCAATGCTGTCATCCTTCATGTCGATAAGGAAGCAGGACGCAAGCTG-TGCC 47165 Query 119422 TG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACAT 119479 || || ||||| ||| ||||||| || || | || || | || ||| | | |||||| Sbjct 47164 TGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGT-AAAGTACTTGTTGGACAT 47106 Query 119480 CTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 | || ||||||||| | |||| ||||| || ||||| ||||||| | || || Sbjct 47105 GTAGTTGTAGGTCTCGATCGCGGCCTCGATGTCGTCGCCGTGGATACCGACAGCAACTCG 47046 Query 119540 CATAAACATGTATTGGGGT 119558 ||| | ||||| || ||| Sbjct 47045 CATGATCATGTGCTGTGGT 47027 >seq157 Length=447866 Score = 141 bits (156), Expect = 1e-28 Identities = 298/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 174521 TACTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 174462 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | ||| | || | || | | | | | ||| ||||| Sbjct 174461 AAGTCGAAGGGGTTGGTGGCGTTGTAGAACTTCTTGTTGCCGAGTGCGAG-GAGCAGACG 174403 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||| | |||| | || |||||| |||| ||| ||| Sbjct 174402 GTCGGCGACGAACTCAATGTATTGGCACATGAGGTTGGCGTTCATGCCGAGCAGGGCACA 174343 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || ||||| ||| |||| ||| ||| ||| |||||| || | |||| || Sbjct 174342 AGGCAGAGCGTCGGAGAGGAACTCCTGCTCGATGGTCACAGCCTCGGTGATGATGCTCTG 174283 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025 | | || | || | | || ||| | | | |||||| ||| || || Sbjct 174282 TACGAGGTCAG-GCGAAGGCTTGTGCTTGAGCTGTGAGAAGAGCAGGCAGGCGAAGTCAG 174224 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||| | ||||||||||| ||||| || || || |||||| ||||| | |||||| | Sbjct 174223 TGTGCATGCCCTCGTCACGAGAGATAAGCTCGTTGGAGAAGGTAAGACCAGCCATGAGGC 174164 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | ||||||||||||||||| || | || ||||||||||||||||| || || || Sbjct 174163 CACGCTTCTTCAACCAGAAGATAGAGGCGAACGAGCCAGAGAAGAAGATGCCTTCGACGG 174104 Query 130146 ACGCGAACGCAAAGAGACG 130164 || || |||| |||||| Sbjct 174103 CAGCAAAGGCAACGAGACG 174085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431844989040