Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq127 196 6e-45 seq157 111 2e-19 seq214 102 1e-16 seq411 86.0 7e-12 >seq127 Length=55032 Score = 196 bits (216), Expect = 6e-45 Identities = 898/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| ||||||| || || ||||||| || || || ||||| || | | Sbjct 47028 CCACAGCACATGATCATGCGAGTTGCTGTCGGTATCCACGGCGACGACATCGAGGCCGCG 47087 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||||| | | ||| || | || || | || || ||||| Sbjct 47088 ATCGAGACCTACAACTACATGTCCAACAAGTACTTT-ACACATGCCTCCCCTACGCTCTT 47146 Query 104341 CAATGCTGGTACACCAAGACCCCAAAT---GTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 || || ||||| || | || | |||| ||||||||||||| || ||||| Sbjct 47147 CAGCGCAGGTACCCCTCAGGCACAGCTTGCGTCC---TGCTTCCTTATCGACATGAAGGA 47203 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGG 104455 ||| || | |||||||| | ||||| | | | ||||| | ||||| ||| Sbjct 47204 TGACAGCATTGAGGGTATCTACGACACTCTCAA--AATCTGCGCCATGATCTCCAAGAAC 47261 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| |||||||| | ||| || | | |||| | || ||| | || Sbjct 47262 GCTGGTGGTATTGGTCTCAACACTCACCGCATTCGTGCCACTGGTGCTTACATTGGCGGC 47321 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || ||| || | ||| | |||| |||||||| || | ||| ||| || || Sbjct 47322 ACCAACGGTACCTCCAACGGTCTCGTTCCCATGCTTCGTGTTTACAACAACACCGCTCGT 47381 Query 104576 TATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATG 104631 || || | || | ||| | | | | || | | || |||| || |||||||| Sbjct 47382 TACGTCGACCAGGGTGG-CAACAAGCGCCCCGGTGCCTTTGCTATCTACCTCGAGCCATG 47440 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| || ||||| ||||| || | || ||||| || | || || | | Sbjct 47441 GCACGCCGACATCATTCCCTTCCTGGACCTTCGCAAGAACCACGGCAAGGAAGAAG-TCC 47499 Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 |||| || || ||||||| ||| || ||||| || || | ||||||||| | || || Sbjct 47500 GTGCTCGTGACCTCTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGCGTGTGGAAC 47559 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||||| ||| |||| | || || || || || ||||| |||||| | | Sbjct 47560 AGAACGGCAACTGGACTCTGATGTGCCCTCACGAGTGCCCCGGTCTTGCCGATGTCTACG 47619 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | |||||||| || || || ||| ||||||||| || || || | | ||| Sbjct 47620 GCGAGGAGTTCGAGGCGCTGTACGAGAAGTACGAGCGTGAGGGCCGTGGTCGCGAGACTA 47679 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | | || | || ||| | || || ||| || |||| |||||| || | || | Sbjct 47680 TCCGCGCACAGAAGGTCTGGTACGCCATCCTCGAGGCTCAGGTCGAGACCGGCAACCCCT 47739 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||||||||||||||| || |||| ||||| || || ||||| |||| || Sbjct 47740 TCATGCTTTACAAAGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATTC 47799 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| | || ||||| ||| | || | || | |||||| || |||| Sbjct 47800 GCAGCTCCAACTTGTGCACAGAGATCATCGAGTACACTGCACCTGATGAGGTCGCCGTGT 47859 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTGA 105108 | ||||| || || ||||||| |||| ||||| || || ||| || || || Sbjct 47860 GCAACCTTGCTTCTCTCGCTCTTCCCACCTATGTTGA--CATTCCCAACGAGCGCTTCGA 47917 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT-TATTG 105167 | | || || ||||| || | |||||||| ||| | |||| ||| ||| | Sbjct 47918 CTTCAAGAAGCTTCACGAGGTCGTCCAGGTCGTCACCAAGAACTTGAACA-AGTGTATCG 47976 Query 105168 ATAGAAATTTTTACCCCG---TTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | || ||||||| | ||| || || || || ||| |||||||||| | Sbjct 47977 AGGTCAACCACTACCCCGTCATCGAG---GCACGCAACAGCAACATGCGACACCGTCCTA 48033 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTT-GA 105282 | ||||||||||| |||||||| |||| ||| || || || || || || ||| || Sbjct 48034 TCGGTCTCGGTGTGAGCGGTCTCGCTGATGCCTTCCTTGCTCTG-CG-CATGCCTTTCGA 48091 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || ||| || | |||| | || ||||||||||| || ||||| || || Sbjct 48092 GTCGCCCGAGGCCCGCCAGCTCAACATCCAGATCTTTGAGACCATCTACCACGCTGCCCT 48151 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | || || || | || ||| ||| | ||||| |||| | || || || Sbjct 48152 TACTGCTTCTTGCGATCTTGCTGAGAAGCTTGGAACGTATGAGACCTACGCTGGCTCCCC 48211 Query 105403 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG---CTTCACT 105458 || || |||||| | ||| || | || |||||| |||| |||| | || | Sbjct 48212 CGCCTC-CAAGGGTGAGCTCCAGTACGACATGTGG---GGTGTGACCCCGTCCGATCTTT 48267 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||||| || ||||||| | || ||| | |||||||| ||| || ||| Sbjct 48268 GGGACTGGGAGGCACTCAAGGCCAGGATTGCCGAGCACGGTCTTCGCAACTCCCTTCTCG 48327 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | ||||| ||||| || || ||| | || ||| |||| || || ||||| || | Sbjct 48328 TTGCTCCTATGCCTACTGCTAGCACTTCGCAGATCATGGGCTTCAACGAGTGCTTCGAGC 48387 Query 105579 CCTACACGACGAACATCTA 105597 | ||||| | |||||||| Sbjct 48388 CGTACACCAGCAACATCTA 48406 >seq157 Length=447866 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| | || ||||| || || || |||||||||||||| || ||| | |||| Sbjct 174085 CGTCTCGTTGCCTTTGCTGCCGTCGAAGGCATCTTCTTCTCTGGCTCGTTCGCCTCTATC 174144 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||| | |||||||| || |||||| | ||||| |||||||||||||||||||||| Sbjct 174145 TTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGCTTATCTCT 174204 Query 94927 CGTGACGAGGG 94937 ||||||||||| Sbjct 174205 CGTGACGAGGG 174215 >seq214 Length=46841 Score = 102 bits (112), Expect = 1e-16 Identities = 245/364 (67%), Gaps = 29/364 (8%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 |||||||||||||| || | | ||||| | ||| || ||||| ||||| || | Sbjct 5918 AAACCATCCATCTCGGTAAGGATCTGGTTCAAAGTGCTCTCGCGTTCGTCATT-GCCG-- 5862 Query 9674 ATACCACCAGCACTGCGTTG-----------CTTTCCCACGGCATCAATCTCATCAATGA 9722 ||||| || || |||| |||||| | ||||||||||| ||||||| Sbjct 5861 ---CCACC--CATTGAGTTGTTGCCTCTCTTCTTTCCAATAGCATCAATCTCGTCAATGA 5807 Query 9723 AGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG- 9781 ||| ||| || || |||| | ||| | | |||||||| ||||| | ||| | Sbjct 5806 AGATGATACAAGGCGTGTTTTTTCTTGCGTTTGCGAAGAGATCGCGTACTC--TTGAAGG 5749 Query 9782 -CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACATTGGATGAAGGGGACAT 9839 || ||||| || ||||||||||| || | | | || ||| | || ||| || || Sbjct 5748 ACCAACACCGACGAACATCTCCACGAACTCAGATCCAGAGACACT-GAAGAAAGGCACGC 5690 Query 9840 TAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGA 9899 |||||||| ||| | ||| ||||||||| |||||||| ||||| || ||| | Sbjct 5689 CGGATTCACCAGCAGTAGCTTTGGCGAGAAGGGTCTTACCAGTACCAGGAGGACCACTCA 5630 Query 9900 GGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAG 9957 ||| || || || || |||||||| || |||| | ||||| |||| | ||| || Sbjct 5629 GGACAGCGCCACGAGGGATCTTGGCTCCGAGCTTC--TGGAATCTCGCAGGCTCCTTGAG 5572 Query 9958 AAAA 9961 ||| Sbjct 5571 GAAA 5568 >seq411 Length=287896 Score = 86.0 bits (94), Expect = 7e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 168454 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTC-AAGAAGATTGA 168512 |||||||| || ||| ||||||| ||||| | |||| |||||| ||| || |||| Sbjct 92984 CGCATCCTGTCCGCCCTGAAGACGCGAGCCAAAGTTGCCACTCGGCTCCAAGCAG-TTGA 93042 Query 168513 TATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTT 168572 | ||||| ||||| | ||||| | ||| | ||||||||| | | ||||||| || Sbjct 93043 TGTTGTTCGAACCGACGTAGTTTTGCGCAAGTCCGACAATCGTCTGCTGGAGAGAGGTTT 93102 Query 168573 CACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCT 168632 |||||| ||| || || | | ||| | | ||||| | | || || || | Sbjct 93103 CACCGTAAGAGTAGGCGGTCAGACCGGAGACTGAACCAGCCAATTCAACGACCTTAATAT 93162 Query 168633 CATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTG 168678 | | ||| || ||| | ||||||| | ||| | |||||||||||| Sbjct 93163 CCTTCTTCAGGTTCCGGCGGAAGCAAGTGTAGAGAACCTTGCGTTG 93208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257635810160