Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Preussia_20sp._20BSL10_20[genbank_20GCA_5F001553865.1_202016-02-09] 434 sequences; 31,475,124 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq53 176 1e-38 seq416 107 6e-18 seq271 93.3 1e-13 >seq53 Length=33237 Score = 176 bits (194), Expect = 1e-38 Identities = 724/1131 (64%), Gaps = 13/1131 (1%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 ||||||| ||||||||| | ||||| || || ||||| || | | | | | |||| | Sbjct 31973 CCGCTATCGGAATCGATCTTGGTACCACCTACTCTTGCGTGGGTATCTTCCGTGATGACC 32032 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || || || || |||||| | || || || || | |||||| || | Sbjct 32033 GCATTGAGATCATCGCCAACGACCAGGGTAACCGCACCACTCCCTCGTTCGTTGCCTTCA 32092 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| |||| ||||| || || || || || | || || || | | Sbjct 32093 CCGACACCGAGCGTCTGATCGGTGACTCGGCCAAGAACCAGGTCGCCATGAACCCTCACA 32152 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGA--CAAATCTACAC 349433 | || || || || || ||||| || ||||| | ||||| | || | | | || Sbjct 32153 ACACCGTCTTCGACGCCAAGCGTCTCATTGGCCGCAAGTTCAAC-GATGCTGAGGTTCAG 32211 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTA 349493 | || | || || || || || | || | || | ||| || || | | Sbjct 32212 G--CCGACATGAAGCACTTCCCCTTCAAGGTCATCGAGAAGGCCGGC---AAGCCCGTCA 32266 Query 349494 TTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGG 349553 |||| || | || ||||| || | || ||||| || || ||||| ||| Sbjct 32267 CCCAGGTCGAGTTCAAGGGTGAGGTCAAGGACTTCACCCCCGAGGAGATCTCATCCATGA 32326 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 | | || ||| || | |||||| | || | |||| || || | | |||| Sbjct 32327 TCCTCACCAAGATGCGCGAGACTGCTGAGTCTTACCTTGGTGGCACCGTTAACAACGCTG 32386 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | || || || || || || || || || | |||||| || || || ||||| || Sbjct 32387 TCATCACCGTTCCCGCATACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTC 32446 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 ||||| || | || ||||| | || || || || |||||||| || || ||||| | Sbjct 32447 TGATTGCTGGCCTCAACGTTCTCCGTATCATCAACGAGCCCACTGCCGCTGCTATTGCCT 32506 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || ||||| || | | || || || ||| | || || || ||| | ||||||| Sbjct 32507 ACGGTCTTGACAAGAAGCAGGAGGGTGAGAAGAATGTCCTCATCTTCGATCTTGGTGGTG 32566 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || ||||| || || || || |||| ||||| || || || || || | |||| Sbjct 32567 GTACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTG 32626 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || || |||||||| || || ||||| || || || || || || | Sbjct 32627 CTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAACCGCCTTGTCAACCACTTCAGCA 32686 Query 349914 AAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 | || || |||||| |||| || | || | | | || || | || | ||||| Sbjct 32687 ACGAGTTCAAGCGT-AAGCACAAGAAGGACCTCAGCGCCAACGCTCGTGCCCTCCGTCGT 32745 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| || || ||||| ||||| | | || ||| | | || ||||| ||| Sbjct 32746 CTCCGCACTGCTTGCGAGCGTGCGAAGCGCACTCTTTCTTCTTCCGCTCAGACCTCCATT 32805 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || ||||| || || | || |||| | || || || |||||||| || Sbjct 32806 GAGATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGCTTC 32865 Query 350093 GAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAA 350152 || || | || ||| || || | | || ||||| || || || | Sbjct 32866 GAGGAGCTCTGCCAGGACCTCTTCCGCGGCACCATGGAGCCCGTCGAGCGCACTCTCCGT 32925 Query 350153 GATGCAAAAAT-GTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACG 350211 || || || || | | | || | | | || | || | || |||||||| || || Sbjct 32926 GACGCCAAGATCGACAAGTCCTCCG-TCCACGAGATCGTCCTTGTCGGTGGTTCCACTCG 32984 Query 350212 TATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATC 350271 ||| || || || || || | | || || || || || ||||| || || | | || Sbjct 32985 TATCCCCAAGGTCCAGAAGCTCGTCTCCGACTTCTTCAACGGCAAGGAGCCCTGCAAGTC 33044 Query 350272 AATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 || || || ||||| || ||||| || |||||||| || ||||| |||| Sbjct 33045 CATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGCTAT 33095 >seq416 Length=196129 Score = 107 bits (118), Expect = 6e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || ||||| || || || Sbjct 78441 CATACCACCACGAAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 78500 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || || ||||| ||||| || || || |||||||| || || |||||||| || Sbjct 78501 GCTCAAAGTGCGACCATCCTCAAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCCGG 78560 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || || || || || | || || | | Sbjct 78561 AGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACGTTGTCGATAGTGTCCGAAGACT 78619 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||| || || || | |||||||| || Sbjct 78620 CAACCTCGAGGGTGATGGTCTTTCCCGT 78647 >seq271 Length=69178 Score = 93.3 bits (102), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || |||||| || | || |||||||| || ||||| ||||| Sbjct 14757 CGCGGCACACCAAGCGTCACATTC---TTTGCTGACACACCAGCGAAATGGAAGGTATTC 14813 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 ||||| | ||||||| |||||||||||| ||||| || || | || || ||||| || Sbjct 14814 AGAGTCATCTGAGTAGCGGGCTCACCAATAGACTGTGCAGCCAGGACACCGACCATCTCA 14873 Query 377578 CCAGG 377582 ||||| Sbjct 14874 CCAGG 14878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245974238502